miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2638 5' -52.5 NC_001491.2 + 32198 0.66 0.97307
Target:  5'- gGCgGAUGGUGCcgGgGCgAGUAGCUCCUc -3'
miRNA:   3'- aCG-UUAUCGCGa-UgCG-UUAUCGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 16845 0.66 0.97307
Target:  5'- cUGCGGuUGGCGCguggucaaguuuUACGCGAaggauaUAcGCCCCg -3'
miRNA:   3'- -ACGUU-AUCGCG------------AUGCGUU------AU-CGGGGa -5'
2638 5' -52.5 NC_001491.2 + 60981 0.66 0.966971
Target:  5'- cUGCGcgAGCGCUcugGCGUuuUGuucuacucGCCCCa -3'
miRNA:   3'- -ACGUuaUCGCGA---UGCGuuAU--------CGGGGa -5'
2638 5' -52.5 NC_001491.2 + 81494 0.66 0.966971
Target:  5'- gUGCAGcggagAGCGCcgACGCcgccacGCCCCa -3'
miRNA:   3'- -ACGUUa----UCGCGa-UGCGuuau--CGGGGa -5'
2638 5' -52.5 NC_001491.2 + 20260 0.66 0.963581
Target:  5'- gGCAGUGGaaGCUgaggggguggACGUGGaAGCCCCUg -3'
miRNA:   3'- aCGUUAUCg-CGA----------UGCGUUaUCGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 65163 0.66 0.959956
Target:  5'- cGaCAGaggAGUGCUACGCGcuuggaaucGGCCCCg -3'
miRNA:   3'- aC-GUUa--UCGCGAUGCGUua-------UCGGGGa -5'
2638 5' -52.5 NC_001491.2 + 33467 0.66 0.959956
Target:  5'- cGCGA-AGCGUacacccgggucUGCGCGGcccucgGGCCCCg -3'
miRNA:   3'- aCGUUaUCGCG-----------AUGCGUUa-----UCGGGGa -5'
2638 5' -52.5 NC_001491.2 + 82743 0.67 0.956089
Target:  5'- gUGCuugccGCGCacgACGCcGUAGCCCUc -3'
miRNA:   3'- -ACGuuau-CGCGa--UGCGuUAUCGGGGa -5'
2638 5' -52.5 NC_001491.2 + 91403 0.67 0.951976
Target:  5'- gGCca-GGUGCUGCGUGcgGGCuCCCa -3'
miRNA:   3'- aCGuuaUCGCGAUGCGUuaUCG-GGGa -5'
2638 5' -52.5 NC_001491.2 + 66906 0.67 0.951976
Target:  5'- cGCAAcGGCGCgucggACGauauguuGGUGGCCCUg -3'
miRNA:   3'- aCGUUaUCGCGa----UGCg------UUAUCGGGGa -5'
2638 5' -52.5 NC_001491.2 + 28555 0.67 0.942993
Target:  5'- cGCcacGGCGggGCGCAGaacGCCCCUg -3'
miRNA:   3'- aCGuuaUCGCgaUGCGUUau-CGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 11758 0.68 0.932983
Target:  5'- aUGUAAUAGCGCUcgucCGCG--GGUUCCUc -3'
miRNA:   3'- -ACGUUAUCGCGAu---GCGUuaUCGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 32956 0.68 0.932983
Target:  5'- cGCcuc-GCGCUACGCcGAggcgcaGGCCCCa -3'
miRNA:   3'- aCGuuauCGCGAUGCG-UUa-----UCGGGGa -5'
2638 5' -52.5 NC_001491.2 + 35269 0.68 0.932983
Target:  5'- cGCGGgucgccuGCGCcgUGCGC--UGGCCCCg -3'
miRNA:   3'- aCGUUau-----CGCG--AUGCGuuAUCGGGGa -5'
2638 5' -52.5 NC_001491.2 + 34372 0.68 0.903404
Target:  5'- gGCAAgAGCgGCaagcgGCGCuccgAGCCCCUg -3'
miRNA:   3'- aCGUUaUCG-CGa----UGCGuua-UCGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 113035 0.69 0.889774
Target:  5'- gGCGAUAcacCGCcagAC-CAAUAGCCCCUa -3'
miRNA:   3'- aCGUUAUc--GCGa--UGcGUUAUCGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 114908 0.69 0.882586
Target:  5'- gGCAAUGGauccgGCGCcGUAGUCCCUg -3'
miRNA:   3'- aCGUUAUCgcga-UGCGuUAUCGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 41170 0.69 0.881854
Target:  5'- aGCGuUAGCGCUagcccuagcguuaGCGC--UAGCCCUa -3'
miRNA:   3'- aCGUuAUCGCGA-------------UGCGuuAUCGGGGa -5'
2638 5' -52.5 NC_001491.2 + 35729 0.7 0.859588
Target:  5'- cUGCcgGGUGGCGCUgcuggagcccgACGcCGAggccgAGCCCCUg -3'
miRNA:   3'- -ACG--UUAUCGCGA-----------UGC-GUUa----UCGGGGA- -5'
2638 5' -52.5 NC_001491.2 + 35169 0.71 0.804985
Target:  5'- cGCAAgcuccUGGUGCUggACGCGGUcuccaccgaggauuGGCCCCa -3'
miRNA:   3'- aCGUU-----AUCGCGA--UGCGUUA--------------UCGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.