miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26380 3' -52.4 NC_005345.2 + 43519 0.66 0.844025
Target:  5'- -cGAUCGGGUCgGCGaucacCGCGUCGGcCa -3'
miRNA:   3'- acUUAGUCUAG-UGCgu---GCGCAGCCuG- -5'
26380 3' -52.4 NC_005345.2 + 35686 0.66 0.844025
Target:  5'- --cGUCGGGcCACaGCACGCcGUCGG-Cg -3'
miRNA:   3'- acuUAGUCUaGUG-CGUGCG-CAGCCuG- -5'
26380 3' -52.4 NC_005345.2 + 7138 0.66 0.844025
Target:  5'- cGGG-CGGggCACGUggcccgggACGgGUCGGACc -3'
miRNA:   3'- aCUUaGUCuaGUGCG--------UGCgCAGCCUG- -5'
26380 3' -52.4 NC_005345.2 + 12521 0.66 0.844025
Target:  5'- cGggUgAucUCGCGCAgcuCGCGgagCGGGCg -3'
miRNA:   3'- aCuuAgUcuAGUGCGU---GCGCa--GCCUG- -5'
26380 3' -52.4 NC_005345.2 + 10627 0.66 0.843132
Target:  5'- cGGccCGGGUCGagcaGCACGCGUgacucagggaccgCGGACc -3'
miRNA:   3'- aCUuaGUCUAGUg---CGUGCGCA-------------GCCUG- -5'
26380 3' -52.4 NC_005345.2 + 40567 0.66 0.84134
Target:  5'- cGAGgcaCGGAUCACGuCGagcggcucaaucccCGCGaCGGACg -3'
miRNA:   3'- aCUUa--GUCUAGUGC-GU--------------GCGCaGCCUG- -5'
26380 3' -52.4 NC_005345.2 + 37915 0.66 0.825739
Target:  5'- gGAGUCGaGUCA-GCGCGUucgCGGACg -3'
miRNA:   3'- aCUUAGUcUAGUgCGUGCGca-GCCUG- -5'
26380 3' -52.4 NC_005345.2 + 16568 0.66 0.825739
Target:  5'- gGGcgCGGGUCuccuucgaGCGUGCGCGggucaaCGGACu -3'
miRNA:   3'- aCUuaGUCUAG--------UGCGUGCGCa-----GCCUG- -5'
26380 3' -52.4 NC_005345.2 + 40362 0.66 0.825739
Target:  5'- cGAgugGUCAGGUgCGCGCAcCGgGUCGuguGGCa -3'
miRNA:   3'- aCU---UAGUCUA-GUGCGU-GCgCAGC---CUG- -5'
26380 3' -52.4 NC_005345.2 + 17328 0.66 0.816269
Target:  5'- ----gCGGGUgCACGCACGCauccCGGACc -3'
miRNA:   3'- acuuaGUCUA-GUGCGUGCGca--GCCUG- -5'
26380 3' -52.4 NC_005345.2 + 30031 0.67 0.796725
Target:  5'- cGAG-CGGAUCgGCGCccACGCGU-GGGCc -3'
miRNA:   3'- aCUUaGUCUAG-UGCG--UGCGCAgCCUG- -5'
26380 3' -52.4 NC_005345.2 + 45004 0.67 0.796725
Target:  5'- aUGAuUCAGAcgaUCGCGUuCGaCGUCGG-Cg -3'
miRNA:   3'- -ACUuAGUCU---AGUGCGuGC-GCAGCCuG- -5'
26380 3' -52.4 NC_005345.2 + 12414 0.67 0.786675
Target:  5'- cGAGUCGGccgaugacGUCgagGCGCGuCGCG-CGGGCu -3'
miRNA:   3'- aCUUAGUC--------UAG---UGCGU-GCGCaGCCUG- -5'
26380 3' -52.4 NC_005345.2 + 43825 0.67 0.780563
Target:  5'- cGggUCGaucaggcuGAUCACGUACugcccggucgacgggGCGUCGGcCg -3'
miRNA:   3'- aCuuAGU--------CUAGUGCGUG---------------CGCAGCCuG- -5'
26380 3' -52.4 NC_005345.2 + 20185 0.67 0.766077
Target:  5'- ----gCAGGUCGCGCAgCGCcucgCGGAUa -3'
miRNA:   3'- acuuaGUCUAGUGCGU-GCGca--GCCUG- -5'
26380 3' -52.4 NC_005345.2 + 36186 0.67 0.755554
Target:  5'- -uGGUC-GAUCucgGCcuGCGCGUCGGACa -3'
miRNA:   3'- acUUAGuCUAGug-CG--UGCGCAGCCUG- -5'
26380 3' -52.4 NC_005345.2 + 22325 0.68 0.744897
Target:  5'- cGGuUCGGGUC-UGCACGUGUgGGGg -3'
miRNA:   3'- aCUuAGUCUAGuGCGUGCGCAgCCUg -5'
26380 3' -52.4 NC_005345.2 + 41589 0.68 0.73412
Target:  5'- cGAAUCA---CugGCG-GCGUCGGAUa -3'
miRNA:   3'- aCUUAGUcuaGugCGUgCGCAGCCUG- -5'
26380 3' -52.4 NC_005345.2 + 3445 0.68 0.73412
Target:  5'- cGAugCGGGccccgagcUCGCGCGgGCuGUCGGACa -3'
miRNA:   3'- aCUuaGUCU--------AGUGCGUgCG-CAGCCUG- -5'
26380 3' -52.4 NC_005345.2 + 40138 0.68 0.701189
Target:  5'- cGggUCuuGAUC-CGCACcgugcugcCGUCGGGCa -3'
miRNA:   3'- aCuuAGu-CUAGuGCGUGc-------GCAGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.