miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26380 5' -60.1 NC_005345.2 + 31937 0.66 0.468731
Target:  5'- aAGCUCGGcgGGUGCGGGUGcggGUgCGGg -3'
miRNA:   3'- gUCGGGCU--UCACGCCCGCag-CAgGCU- -5'
26380 5' -60.1 NC_005345.2 + 6183 0.66 0.449422
Target:  5'- cCGGCCCGGuucGUGCGcGUGcCGcCCGGc -3'
miRNA:   3'- -GUCGGGCUu--CACGCcCGCaGCaGGCU- -5'
26380 5' -60.1 NC_005345.2 + 15314 0.66 0.449422
Target:  5'- -cGCCCGGcuguaGGU-CGGuGCGUCGgCCGGg -3'
miRNA:   3'- guCGGGCU-----UCAcGCC-CGCAGCaGGCU- -5'
26380 5' -60.1 NC_005345.2 + 37564 0.66 0.434295
Target:  5'- uCGGCCCGAGGcgggcgcaggcgggcUGCaGGCGggCGaCCGGc -3'
miRNA:   3'- -GUCGGGCUUC---------------ACGcCCGCa-GCaGGCU- -5'
26380 5' -60.1 NC_005345.2 + 1110 0.66 0.430559
Target:  5'- uCGGCUCGAuGUGCGcGGCccaGUUCGAc -3'
miRNA:   3'- -GUCGGGCUuCACGC-CCGcagCAGGCU- -5'
26380 5' -60.1 NC_005345.2 + 33063 0.66 0.430559
Target:  5'- gGGCUCGuAGGUGgGGGUGUCcaucacaCCGAc -3'
miRNA:   3'- gUCGGGC-UUCACgCCCGCAGca-----GGCU- -5'
26380 5' -60.1 NC_005345.2 + 30880 0.67 0.403158
Target:  5'- -uGCUCcGGGUGCGGGCGaCGgcgcggCCGGc -3'
miRNA:   3'- guCGGGcUUCACGCCCGCaGCa-----GGCU- -5'
26380 5' -60.1 NC_005345.2 + 40054 0.67 0.403158
Target:  5'- --aCCgCGAcGUGCGGGCGgUCG-CCGGc -3'
miRNA:   3'- gucGG-GCUuCACGCCCGC-AGCaGGCU- -5'
26380 5' -60.1 NC_005345.2 + 25542 0.67 0.403158
Target:  5'- -uGCCCGGuccGCcGGCGUCGcgCCGAa -3'
miRNA:   3'- guCGGGCUucaCGcCCGCAGCa-GGCU- -5'
26380 5' -60.1 NC_005345.2 + 26171 0.67 0.394273
Target:  5'- gAGCCCGAGuucGCGGGUGUCc-UCGAc -3'
miRNA:   3'- gUCGGGCUUca-CGCCCGCAGcaGGCU- -5'
26380 5' -60.1 NC_005345.2 + 2664 0.67 0.385516
Target:  5'- gCGGCCgacuugaucggCGAGGccGCGGGCGUUGUCg-- -3'
miRNA:   3'- -GUCGG-----------GCUUCa-CGCCCGCAGCAGgcu -5'
26380 5' -60.1 NC_005345.2 + 29533 0.67 0.376888
Target:  5'- uCGGCgUCGAGGUacucGgGGGCGUCGUCg-- -3'
miRNA:   3'- -GUCG-GGCUUCA----CgCCCGCAGCAGgcu -5'
26380 5' -60.1 NC_005345.2 + 11654 0.67 0.368391
Target:  5'- gCAGCCCGcgcccgGCGGGaaCGUCGUaCCGc -3'
miRNA:   3'- -GUCGGGCuuca--CGCCC--GCAGCA-GGCu -5'
26380 5' -60.1 NC_005345.2 + 991 0.68 0.351796
Target:  5'- gAGCUCGu-GUcCGGuGUGUCGUCCGGu -3'
miRNA:   3'- gUCGGGCuuCAcGCC-CGCAGCAGGCU- -5'
26380 5' -60.1 NC_005345.2 + 32892 0.68 0.343699
Target:  5'- cCGGCCCGcAGGcUGgGGGCGcugCGggCCGGu -3'
miRNA:   3'- -GUCGGGC-UUC-ACgCCCGCa--GCa-GGCU- -5'
26380 5' -60.1 NC_005345.2 + 12310 0.68 0.327911
Target:  5'- -uGCCCcGAGUGCGcGGCGccgaucggUCGUCCc- -3'
miRNA:   3'- guCGGGcUUCACGC-CCGC--------AGCAGGcu -5'
26380 5' -60.1 NC_005345.2 + 23305 0.69 0.312666
Target:  5'- aAGCCCGAGGgGCGgaaGGCG-CG-CCGGa -3'
miRNA:   3'- gUCGGGCUUCaCGC---CCGCaGCaGGCU- -5'
26380 5' -60.1 NC_005345.2 + 35862 0.69 0.312666
Target:  5'- uCGGgCgGggGUcGgGGGCGUCGUcgCCGAc -3'
miRNA:   3'- -GUCgGgCuuCA-CgCCCGCAGCA--GGCU- -5'
26380 5' -60.1 NC_005345.2 + 9444 0.69 0.305248
Target:  5'- uGGCCCGAGcucGUccCGGGCGgUGUCCGGu -3'
miRNA:   3'- gUCGGGCUU---CAc-GCCCGCaGCAGGCU- -5'
26380 5' -60.1 NC_005345.2 + 31168 0.69 0.297965
Target:  5'- gGGgUCGAAGUGCGGGUG-CGUacUCGGg -3'
miRNA:   3'- gUCgGGCUUCACGCCCGCaGCA--GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.