miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26381 3' -55.8 NC_005345.2 + 34603 0.66 0.717015
Target:  5'- uGCCGuaccGGGCGaggaGCcaGCGUGCGGCGg -3'
miRNA:   3'- -CGGC----UCCGCaag-CGc-UGCAUGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 5588 0.66 0.717015
Target:  5'- uGgCGAGGCGgUCgGCGAgcuUGUcgGCGACGa -3'
miRNA:   3'- -CgGCUCCGCaAG-CGCU---GCA--UGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 23633 0.66 0.717015
Target:  5'- gGCUGcgcauGGUGUUCGCcgaGGCGgACGGCGc -3'
miRNA:   3'- -CGGCu----CCGCAAGCG---CUGCaUGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 29641 0.66 0.715959
Target:  5'- aUCGAGGUGUacgaCGCGAaggucgcCGUcgACGGCGUg -3'
miRNA:   3'- cGGCUCCGCAa---GCGCU-------GCA--UGCUGCA- -5'
26381 3' -55.8 NC_005345.2 + 4008 0.66 0.714901
Target:  5'- aGCCGcAGcGCGUcCGCGuugucccgccccUGUGCGACGa -3'
miRNA:   3'- -CGGC-UC-CGCAaGCGCu-----------GCAUGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 46087 0.66 0.706417
Target:  5'- cGCCGGGGCcugCGCGGacauccacGCGGCGa -3'
miRNA:   3'- -CGGCUCCGcaaGCGCUgca-----UGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 36582 0.66 0.706417
Target:  5'- aCCGAGGUGUUCGaCcACGaACGAUc- -3'
miRNA:   3'- cGGCUCCGCAAGC-GcUGCaUGCUGca -5'
26381 3' -55.8 NC_005345.2 + 3878 0.66 0.706417
Target:  5'- cGCCGAGuGCcugcagCGCGGCG-AgGGCGg -3'
miRNA:   3'- -CGGCUC-CGcaa---GCGCUGCaUgCUGCa -5'
26381 3' -55.8 NC_005345.2 + 10558 0.66 0.706417
Target:  5'- gGCCGAGGUaaucccggccgcGagCGCcACGUACGcCGUg -3'
miRNA:   3'- -CGGCUCCG------------CaaGCGcUGCAUGCuGCA- -5'
26381 3' -55.8 NC_005345.2 + 22702 0.66 0.695749
Target:  5'- -gCGGGGCGg-CGUGugGcAUGACGUc -3'
miRNA:   3'- cgGCUCCGCaaGCGCugCaUGCUGCA- -5'
26381 3' -55.8 NC_005345.2 + 38246 0.66 0.695749
Target:  5'- aCCGgugcAGGCGUgaUCGaUGACGUGCGgguGCGg -3'
miRNA:   3'- cGGC----UCCGCA--AGC-GCUGCAUGC---UGCa -5'
26381 3' -55.8 NC_005345.2 + 32972 0.66 0.695749
Target:  5'- aGUCGAGGCcgaccugCGCGAgaCcUACGGCGUg -3'
miRNA:   3'- -CGGCUCCGcaa----GCGCU--GcAUGCUGCA- -5'
26381 3' -55.8 NC_005345.2 + 36712 0.66 0.68502
Target:  5'- uGCgCGAGGUagcccgCGCGACGcgccuCGACGUc -3'
miRNA:   3'- -CG-GCUCCGcaa---GCGCUGCau---GCUGCA- -5'
26381 3' -55.8 NC_005345.2 + 31179 0.66 0.68502
Target:  5'- -gCGGGuGCGUacucgggCGCGGCGggUGCGGCGg -3'
miRNA:   3'- cgGCUC-CGCAa------GCGCUGC--AUGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 2684 0.66 0.68502
Target:  5'- gGCCGcGGGCGUugUCGaUGugGgugucgGCGGCGc -3'
miRNA:   3'- -CGGC-UCCGCA--AGC-GCugCa-----UGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 26749 0.66 0.674242
Target:  5'- cGCCGAGGaacucgacgaGUccccggCGCGG-GUGCGGCGg -3'
miRNA:   3'- -CGGCUCCg---------CAa-----GCGCUgCAUGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 41338 0.67 0.663425
Target:  5'- cGCCGA--CGUUCaCGGCGUccgGCGGCGg -3'
miRNA:   3'- -CGGCUccGCAAGcGCUGCA---UGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 17882 0.67 0.663425
Target:  5'- cGCCGuGGCGUagUCGCcGAUc-ACGGCGc -3'
miRNA:   3'- -CGGCuCCGCA--AGCG-CUGcaUGCUGCa -5'
26381 3' -55.8 NC_005345.2 + 40020 0.67 0.65909
Target:  5'- gGCCGAcauGGCGUgcuugggcagaucuUcgaucacCGCGACGUGCGGgCGg -3'
miRNA:   3'- -CGGCU---CCGCA--------------A-------GCGCUGCAUGCU-GCa -5'
26381 3' -55.8 NC_005345.2 + 40948 0.67 0.65258
Target:  5'- gGCCGAucucgugcaggcGGCGUcuuUCGCGAuCGaccuCGGCGUc -3'
miRNA:   3'- -CGGCU------------CCGCA---AGCGCU-GCau--GCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.