miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26381 5' -57.7 NC_005345.2 + 16204 0.66 0.554824
Target:  5'- --uCGCCGugCuCCGUcagGAGGUGGGcGAg -3'
miRNA:   3'- cauGCGGCugG-GGCG---CUUCACCCuUU- -5'
26381 5' -57.7 NC_005345.2 + 36373 0.66 0.554824
Target:  5'- cGUACGCgGgcgcGCUCCGCGGccgcggcguGUGGGAc- -3'
miRNA:   3'- -CAUGCGgC----UGGGGCGCUu--------CACCCUuu -5'
26381 5' -57.7 NC_005345.2 + 5228 0.66 0.554824
Target:  5'- -cACGCCgucgggGugCCCGCGGuacacGGUGGGc-- -3'
miRNA:   3'- caUGCGG------CugGGGCGCU-----UCACCCuuu -5'
26381 5' -57.7 NC_005345.2 + 3893 0.66 0.533404
Target:  5'- --cCGCCGACgCUCGCaguGUGGGGGu -3'
miRNA:   3'- cauGCGGCUG-GGGCGcuuCACCCUUu -5'
26381 5' -57.7 NC_005345.2 + 17981 0.66 0.522804
Target:  5'- aGUACGCacccgcacuuCGACCCCGCGcacccGAGUGcGAu- -3'
miRNA:   3'- -CAUGCG----------GCUGGGGCGC-----UUCACcCUuu -5'
26381 5' -57.7 NC_005345.2 + 15820 0.66 0.512286
Target:  5'- cUACGCCgcGACCgCGUGGAGaUGGGc-- -3'
miRNA:   3'- cAUGCGG--CUGGgGCGCUUC-ACCCuuu -5'
26381 5' -57.7 NC_005345.2 + 47127 0.66 0.512286
Target:  5'- -cAgGCCGGCCCCggagcaGCGGAGcgagGGGGc- -3'
miRNA:   3'- caUgCGGCUGGGG------CGCUUCa---CCCUuu -5'
26381 5' -57.7 NC_005345.2 + 33719 0.66 0.512286
Target:  5'- --gUGCCGACCCCGCuuc--GGGAu- -3'
miRNA:   3'- cauGCGGCUGGGGCGcuucaCCCUuu -5'
26381 5' -57.7 NC_005345.2 + 28563 0.66 0.501856
Target:  5'- --cCGCCGGCCCCG-GAuuuGGgcccGGGAAu -3'
miRNA:   3'- cauGCGGCUGGGGCgCU---UCa---CCCUUu -5'
26381 5' -57.7 NC_005345.2 + 13615 0.67 0.491521
Target:  5'- gGUGC-CCGAgCCCCGCGAGGaaccGGAc- -3'
miRNA:   3'- -CAUGcGGCU-GGGGCGCUUCac--CCUuu -5'
26381 5' -57.7 NC_005345.2 + 11648 0.67 0.491521
Target:  5'- -cGCGCCGcAgCCCGCGcccGGcGGGAAc -3'
miRNA:   3'- caUGCGGC-UgGGGCGCu--UCaCCCUUu -5'
26381 5' -57.7 NC_005345.2 + 14616 0.67 0.481285
Target:  5'- -aGCGCCccGACCuUCGCGAGGaccGGGAGc -3'
miRNA:   3'- caUGCGG--CUGG-GGCGCUUCa--CCCUUu -5'
26381 5' -57.7 NC_005345.2 + 47708 0.67 0.471154
Target:  5'- gGUACGaCGACCCCGUGccGUcGGAc- -3'
miRNA:   3'- -CAUGCgGCUGGGGCGCuuCAcCCUuu -5'
26381 5' -57.7 NC_005345.2 + 8716 0.67 0.451224
Target:  5'- cGUGCGCgGGCCgaucgCCGCGucGGUGGcGAGc -3'
miRNA:   3'- -CAUGCGgCUGG-----GGCGCu-UCACC-CUUu -5'
26381 5' -57.7 NC_005345.2 + 34157 0.67 0.441433
Target:  5'- -gGCGgCGGCCCCGaGGAGUGGc--- -3'
miRNA:   3'- caUGCgGCUGGGGCgCUUCACCcuuu -5'
26381 5' -57.7 NC_005345.2 + 35592 0.68 0.422221
Target:  5'- --cCGCCGugCCCGUGGAuGUGGucGAc -3'
miRNA:   3'- cauGCGGCugGGGCGCUU-CACCcuUU- -5'
26381 5' -57.7 NC_005345.2 + 17701 0.68 0.422221
Target:  5'- -cGCGCCGGCCUCGgCGAc--GGGAc- -3'
miRNA:   3'- caUGCGGCUGGGGC-GCUucaCCCUuu -5'
26381 5' -57.7 NC_005345.2 + 47931 0.7 0.300686
Target:  5'- cGUACGCCGACCCgaagcgugGCGAgaucacccugucccAGUGGuGGAAa -3'
miRNA:   3'- -CAUGCGGCUGGGg-------CGCU--------------UCACC-CUUU- -5'
26381 5' -57.7 NC_005345.2 + 4226 0.71 0.288175
Target:  5'- gGUACGCCGagccgauggucGCCgCUGCGGAGcGGGAc- -3'
miRNA:   3'- -CAUGCGGC-----------UGG-GGCGCUUCaCCCUuu -5'
26381 5' -57.7 NC_005345.2 + 25053 1.06 0.000808
Target:  5'- uGUACGCCGACCCCGCGAAGUGGGAAAg -3'
miRNA:   3'- -CAUGCGGCUGGGGCGCUUCACCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.