miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26382 3' -55.7 NC_005345.2 + 30462 0.66 0.669267
Target:  5'- cCGg-GCaCGCUGcgcgcgaucugcGUCGCGGUGGuGCGCc -3'
miRNA:   3'- -GCagCG-GCGAC------------UAGUGCUACCuCGUG- -5'
26382 3' -55.7 NC_005345.2 + 32830 0.66 0.64718
Target:  5'- -uUCGCUGCgcggGAgugagcUCGgGAUGGuGCACg -3'
miRNA:   3'- gcAGCGGCGa---CU------AGUgCUACCuCGUG- -5'
26382 3' -55.7 NC_005345.2 + 38792 0.66 0.64718
Target:  5'- cCGUCGgcgugcCCGCUGuaacUCACGcUGGAcagcuGCACg -3'
miRNA:   3'- -GCAGC------GGCGACu---AGUGCuACCU-----CGUG- -5'
26382 3' -55.7 NC_005345.2 + 45817 0.66 0.625036
Target:  5'- cCGUCGUCGCgaccgUGAcgugCACGgcGGcGGCGCg -3'
miRNA:   3'- -GCAGCGGCG-----ACUa---GUGCuaCC-UCGUG- -5'
26382 3' -55.7 NC_005345.2 + 43865 0.67 0.613969
Target:  5'- gCGUCgGCCGg-GAcucCGCGgcGGAGCGCg -3'
miRNA:   3'- -GCAG-CGGCgaCUa--GUGCuaCCUCGUG- -5'
26382 3' -55.7 NC_005345.2 + 12591 0.67 0.591891
Target:  5'- uGUCGCCGCccccgaaGcgCACGAgcucGGGGcCGCg -3'
miRNA:   3'- gCAGCGGCGa------CuaGUGCUa---CCUC-GUG- -5'
26382 3' -55.7 NC_005345.2 + 9802 0.67 0.591891
Target:  5'- -uUCGCCGCUGuGUCGCGGccGGuGC-Cg -3'
miRNA:   3'- gcAGCGGCGAC-UAGUGCUa-CCuCGuG- -5'
26382 3' -55.7 NC_005345.2 + 23674 0.67 0.5809
Target:  5'- gGUCGCgGCcGGUCGgGcgGGccgAGCGCa -3'
miRNA:   3'- gCAGCGgCGaCUAGUgCuaCC---UCGUG- -5'
26382 3' -55.7 NC_005345.2 + 26345 0.68 0.559054
Target:  5'- cCGUCGCCGUc---CGCGGUGuGGGCGu -3'
miRNA:   3'- -GCAGCGGCGacuaGUGCUAC-CUCGUg -5'
26382 3' -55.7 NC_005345.2 + 45879 0.68 0.548216
Target:  5'- cCGaCGCCGUcGAUCACGGUcu-GCACg -3'
miRNA:   3'- -GCaGCGGCGaCUAGUGCUAccuCGUG- -5'
26382 3' -55.7 NC_005345.2 + 8835 0.68 0.548216
Target:  5'- uCGUCuGCCGCggcugcggCACGGUgaacgGGGGCGCg -3'
miRNA:   3'- -GCAG-CGGCGacua----GUGCUA-----CCUCGUG- -5'
26382 3' -55.7 NC_005345.2 + 14961 0.68 0.548216
Target:  5'- gCGcCGCgGCUGAUCAguCGGUcGGGGCc- -3'
miRNA:   3'- -GCaGCGgCGACUAGU--GCUA-CCUCGug -5'
26382 3' -55.7 NC_005345.2 + 4628 0.68 0.526748
Target:  5'- gGUCgaGCUGCUGAaCGCGGaucgGGGGCAg -3'
miRNA:   3'- gCAG--CGGCGACUaGUGCUa---CCUCGUg -5'
26382 3' -55.7 NC_005345.2 + 40851 0.69 0.484829
Target:  5'- --cCGCCGC-GAUCACGugcaGGAGgGCg -3'
miRNA:   3'- gcaGCGGCGaCUAGUGCua--CCUCgUG- -5'
26382 3' -55.7 NC_005345.2 + 18985 0.7 0.394258
Target:  5'- gGUCGCCGCUGGccggcgggacgaccUCGacgGGUGGcGCGCc -3'
miRNA:   3'- gCAGCGGCGACU--------------AGUg--CUACCuCGUG- -5'
26382 3' -55.7 NC_005345.2 + 32720 0.71 0.370084
Target:  5'- aGcCGCCGCUGG--ACGAUGcAGCACc -3'
miRNA:   3'- gCaGCGGCGACUagUGCUACcUCGUG- -5'
26382 3' -55.7 NC_005345.2 + 3347 0.71 0.352842
Target:  5'- gCGggCGCCGCguucGAUCGCGc-GGAGCAUc -3'
miRNA:   3'- -GCa-GCGGCGa---CUAGUGCuaCCUCGUG- -5'
26382 3' -55.7 NC_005345.2 + 16377 0.72 0.323262
Target:  5'- gCGUCGCCGCucugcgccgccaccaUGAggggCAUGAUGuuGAGCGCc -3'
miRNA:   3'- -GCAGCGGCG---------------ACUa---GUGCUAC--CUCGUG- -5'
26382 3' -55.7 NC_005345.2 + 25869 1.09 0.000806
Target:  5'- cCGUCGCCGCUGAUCACGAUGGAGCACc -3'
miRNA:   3'- -GCAGCGGCGACUAGUGCUACCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.