miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26382 5' -54.8 NC_005345.2 + 43406 0.66 0.748352
Target:  5'- -cGCAgUCcUCGGcUGCGGCCCGGAa- -3'
miRNA:   3'- caCGU-AGcAGCUcAUGCUGGGCCUcu -5'
26382 5' -54.8 NC_005345.2 + 44625 0.66 0.737858
Target:  5'- cGUGCcccUCGUCGAGgcaGACC-GGAGc -3'
miRNA:   3'- -CACGu--AGCAGCUCaugCUGGgCCUCu -5'
26382 5' -54.8 NC_005345.2 + 17559 0.66 0.727256
Target:  5'- -gGCcgCGcCGAGcAgGGCCCGGcAGAg -3'
miRNA:   3'- caCGuaGCaGCUCaUgCUGGGCC-UCU- -5'
26382 5' -54.8 NC_005345.2 + 18757 0.66 0.710098
Target:  5'- -cGCGUCGUCGAgGUACGccucgaccugcgcccGCCgCGGGc- -3'
miRNA:   3'- caCGUAGCAGCU-CAUGC---------------UGG-GCCUcu -5'
26382 5' -54.8 NC_005345.2 + 26123 0.66 0.705776
Target:  5'- aUGCAgcUgGUCGAGUuCG-CCCGGAu- -3'
miRNA:   3'- cACGU--AgCAGCUCAuGCuGGGCCUcu -5'
26382 5' -54.8 NC_005345.2 + 31756 0.66 0.694921
Target:  5'- gGUGCGggGUgCGAGUGCGuCUCGGGu- -3'
miRNA:   3'- -CACGUagCA-GCUCAUGCuGGGCCUcu -5'
26382 5' -54.8 NC_005345.2 + 2028 0.66 0.694921
Target:  5'- -gGCGuccUCGUCGAGcgggcccggcGCGGCCCGGcGGg -3'
miRNA:   3'- caCGU---AGCAGCUCa---------UGCUGGGCCuCU- -5'
26382 5' -54.8 NC_005345.2 + 8734 0.67 0.673039
Target:  5'- -cGCGUCGguggCGAGcGCGACgacugcagcaUCGGGGAg -3'
miRNA:   3'- caCGUAGCa---GCUCaUGCUG----------GGCCUCU- -5'
26382 5' -54.8 NC_005345.2 + 31921 0.67 0.673039
Target:  5'- gGUGCGagGUCGAGUAaaGCUCGGcGGGu -3'
miRNA:   3'- -CACGUagCAGCUCAUgcUGGGCC-UCU- -5'
26382 5' -54.8 NC_005345.2 + 40266 0.67 0.651001
Target:  5'- -gGCGaCGUCGAcgACGGCCCGGccguGAu -3'
miRNA:   3'- caCGUaGCAGCUcaUGCUGGGCCu---CU- -5'
26382 5' -54.8 NC_005345.2 + 23417 0.67 0.649896
Target:  5'- -gGCAgcUCGUCGAGUucguguggcccgaGCGcACCCGcGAGu -3'
miRNA:   3'- caCGU--AGCAGCUCA-------------UGC-UGGGC-CUCu -5'
26382 5' -54.8 NC_005345.2 + 14612 0.67 0.63995
Target:  5'- -cGgAUCGaCGGGUACG-CCCGcGAGGc -3'
miRNA:   3'- caCgUAGCaGCUCAUGCuGGGC-CUCU- -5'
26382 5' -54.8 NC_005345.2 + 40348 0.68 0.628892
Target:  5'- -gGCGggCGaCGGGUACGGCCgUGGGGGc -3'
miRNA:   3'- caCGUa-GCaGCUCAUGCUGG-GCCUCU- -5'
26382 5' -54.8 NC_005345.2 + 31203 0.68 0.628892
Target:  5'- gGUGCGg---CGGGUGCGcACCCGGGu- -3'
miRNA:   3'- -CACGUagcaGCUCAUGC-UGGGCCUcu -5'
26382 5' -54.8 NC_005345.2 + 9985 0.68 0.628892
Target:  5'- -gGCGUCGUCauGGUGCGACacggcgCCGGuGAg -3'
miRNA:   3'- caCGUAGCAGc-UCAUGCUG------GGCCuCU- -5'
26382 5' -54.8 NC_005345.2 + 31277 0.68 0.617837
Target:  5'- gGUGCGggGgCGGGUGCGcGCCaCGGGGGg -3'
miRNA:   3'- -CACGUagCaGCUCAUGC-UGG-GCCUCU- -5'
26382 5' -54.8 NC_005345.2 + 22278 0.69 0.552091
Target:  5'- -cGgAUCGUCGAG-GCGGCCgGGGcGAc -3'
miRNA:   3'- caCgUAGCAGCUCaUGCUGGgCCU-CU- -5'
26382 5' -54.8 NC_005345.2 + 2112 0.7 0.498967
Target:  5'- -aGCGUCGUCGAG-ACGGCgCCGcAGu -3'
miRNA:   3'- caCGUAGCAGCUCaUGCUG-GGCcUCu -5'
26382 5' -54.8 NC_005345.2 + 9302 0.7 0.488608
Target:  5'- -cGCGgccggCGUUGAGUucgucgGCGACCCGGGc- -3'
miRNA:   3'- caCGUa----GCAGCUCA------UGCUGGGCCUcu -5'
26382 5' -54.8 NC_005345.2 + 29974 0.7 0.488608
Target:  5'- cGUGCA-CGUCGAcgggcagccGUACgGGCCCGGcGAc -3'
miRNA:   3'- -CACGUaGCAGCU---------CAUG-CUGGGCCuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.