miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26383 3' -63.9 NC_005345.2 + 36836 0.66 0.313361
Target:  5'- gACCgaUCGGCGccgcgcacucGGGGCaCUCGAuCCCGAGc -3'
miRNA:   3'- -UGG--AGCCGC----------UCCUG-GGGCUcGGGCUC- -5'
26383 3' -63.9 NC_005345.2 + 18190 0.66 0.313361
Target:  5'- cACCgUCGGCGAGGcgcGCgCCGAGUggggcgccgcguUCGGGu -3'
miRNA:   3'- -UGG-AGCCGCUCC---UGgGGCUCG------------GGCUC- -5'
26383 3' -63.9 NC_005345.2 + 4260 0.66 0.312629
Target:  5'- -gCUCGGCGAacaccggcggugcGGGCagCUCGGGCUCGGGc -3'
miRNA:   3'- ugGAGCCGCU-------------CCUG--GGGCUCGGGCUC- -5'
26383 3' -63.9 NC_005345.2 + 22803 0.66 0.308269
Target:  5'- uCCUCGGCGGGGggcgggucugacaugGCgcgucugcagauuCUCGAacuGCCCGAGg -3'
miRNA:   3'- uGGAGCCGCUCC---------------UG-------------GGGCU---CGGGCUC- -5'
26383 3' -63.9 NC_005345.2 + 15301 0.66 0.306107
Target:  5'- cGCCUCGGCGAGGuucguCgCCGA-CuuGGu -3'
miRNA:   3'- -UGGAGCCGCUCCu----GgGGCUcGggCUc -5'
26383 3' -63.9 NC_005345.2 + 39148 0.66 0.303956
Target:  5'- gGCCgCGGCGAGGcucuucgcuuucACguggucgaggcggaCCCGcAGCCCGAa -3'
miRNA:   3'- -UGGaGCCGCUCC------------UG--------------GGGC-UCGGGCUc -5'
26383 3' -63.9 NC_005345.2 + 30906 0.66 0.298982
Target:  5'- ---cCGGCGAgcagcaccgGGACCagggCGAGCCCGAc -3'
miRNA:   3'- uggaGCCGCU---------CCUGGg---GCUCGGGCUc -5'
26383 3' -63.9 NC_005345.2 + 27812 0.66 0.298982
Target:  5'- aGCCgcgcacgGGCGAGGACCcgaCCGAGCuguacCCGGu -3'
miRNA:   3'- -UGGag-----CCGCUCCUGG---GGCUCG-----GGCUc -5'
26383 3' -63.9 NC_005345.2 + 9015 0.66 0.291987
Target:  5'- gGCCUCGGUGcgcGGGAUCa-GAGCCgGGu -3'
miRNA:   3'- -UGGAGCCGC---UCCUGGggCUCGGgCUc -5'
26383 3' -63.9 NC_005345.2 + 34699 0.66 0.277715
Target:  5'- uGCCgagcgagUCGGCGAGcgagcagagcgcGACCUCGAucGCCCGGc -3'
miRNA:   3'- -UGG-------AGCCGCUC------------CUGGGGCU--CGGGCUc -5'
26383 3' -63.9 NC_005345.2 + 36516 0.66 0.271117
Target:  5'- cGCCcCGGCGAacuggcguGGgugggcgaacgcgGCCCCGAGCUCGuGc -3'
miRNA:   3'- -UGGaGCCGCU--------CC-------------UGGGGCUCGGGCuC- -5'
26383 3' -63.9 NC_005345.2 + 13276 0.67 0.265286
Target:  5'- aGCUcgUCGGCGAcGAcgcCCCCGAcccccGCCCGAa -3'
miRNA:   3'- -UGG--AGCCGCUcCU---GGGGCU-----CGGGCUc -5'
26383 3' -63.9 NC_005345.2 + 32511 0.67 0.265286
Target:  5'- cCCUcugcCGGCGGGcGGCCCgaucugcgCGGGUCCGGGc -3'
miRNA:   3'- uGGA----GCCGCUC-CUGGG--------GCUCGGGCUC- -5'
26383 3' -63.9 NC_005345.2 + 26053 0.67 0.265286
Target:  5'- cGCCUCGGCGAGcGCCU---GCUCGAa -3'
miRNA:   3'- -UGGAGCCGCUCcUGGGgcuCGGGCUc -5'
26383 3' -63.9 NC_005345.2 + 30109 0.67 0.265286
Target:  5'- gGCCagggCGGCGAGGcggaGCagCG-GCCCGAGg -3'
miRNA:   3'- -UGGa---GCCGCUCC----UGggGCuCGGGCUC- -5'
26383 3' -63.9 NC_005345.2 + 12518 0.67 0.265286
Target:  5'- cCCUUGGCGA--ACCCgcgcagcggcaCGAGCCCGGc -3'
miRNA:   3'- uGGAGCCGCUccUGGG-----------GCUCGGGCUc -5'
26383 3' -63.9 NC_005345.2 + 44372 0.67 0.264645
Target:  5'- cACCUcgaacgggucgcCGGCGAGGguGCCgucgagguccgagUCGAGCCCGGu -3'
miRNA:   3'- -UGGA------------GCCGCUCC--UGG-------------GGCUCGGGCUc -5'
26383 3' -63.9 NC_005345.2 + 11597 0.67 0.258928
Target:  5'- cGCCUCGGgcCGAGGugCCgGcgaggggaucacAGCCCGc- -3'
miRNA:   3'- -UGGAGCC--GCUCCugGGgC------------UCGGGCuc -5'
26383 3' -63.9 NC_005345.2 + 32733 0.67 0.258928
Target:  5'- cCCUCGGCGuGGGCCCgCuuGCUCa-- -3'
miRNA:   3'- uGGAGCCGCuCCUGGG-GcuCGGGcuc -5'
26383 3' -63.9 NC_005345.2 + 15813 0.67 0.258928
Target:  5'- cGCuCUCGGCGAcuccGGCCgaCG-GCCCGAGc -3'
miRNA:   3'- -UG-GAGCCGCUc---CUGGg-GCuCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.