miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26383 5' -53.7 NC_005345.2 + 37012 0.66 0.765981
Target:  5'- cCCUCGGCAUgccgccuuUCAgcGGcACCGGGcGAGc -3'
miRNA:   3'- aGGAGCUGUA--------AGU--CC-UGGCCCaCUUa -5'
26383 5' -53.7 NC_005345.2 + 18051 0.66 0.762852
Target:  5'- aCCUCGAacccgaacccgagcCGUcccUCuGGGACCGGGUGc-- -3'
miRNA:   3'- aGGAGCU--------------GUA---AG-UCCUGGCCCACuua -5'
26383 5' -53.7 NC_005345.2 + 2567 0.68 0.656727
Target:  5'- cCCggUCGACGUgcUCGGGGCCGaGGcUGAc- -3'
miRNA:   3'- aGG--AGCUGUA--AGUCCUGGC-CC-ACUua -5'
26383 5' -53.7 NC_005345.2 + 10507 0.68 0.645476
Target:  5'- cCCUCGACGggCAGGA-CGGGa---- -3'
miRNA:   3'- aGGAGCUGUaaGUCCUgGCCCacuua -5'
26383 5' -53.7 NC_005345.2 + 32299 0.68 0.622948
Target:  5'- gUCCUCGAacugCGGGACggCGcGGUGAAg -3'
miRNA:   3'- -AGGAGCUguaaGUCCUG--GC-CCACUUa -5'
26383 5' -53.7 NC_005345.2 + 7353 0.69 0.600453
Target:  5'- gUCUCGACGUcCGGGGCgucGGUGAGUg -3'
miRNA:   3'- aGGAGCUGUAaGUCCUGgc-CCACUUA- -5'
26383 5' -53.7 NC_005345.2 + 9836 0.69 0.589243
Target:  5'- gUCCUCGACGacCAGGACgucaGaGGUGAu- -3'
miRNA:   3'- -AGGAGCUGUaaGUCCUGg---C-CCACUua -5'
26383 5' -53.7 NC_005345.2 + 26090 0.69 0.555876
Target:  5'- gCCUCGAUccgCAGGcguACCGGGUGu-- -3'
miRNA:   3'- aGGAGCUGuaaGUCC---UGGCCCACuua -5'
26383 5' -53.7 NC_005345.2 + 31939 0.7 0.533935
Target:  5'- -gCUCGGCGggugCGGGugCGGGUGc-- -3'
miRNA:   3'- agGAGCUGUaa--GUCCugGCCCACuua -5'
26383 5' -53.7 NC_005345.2 + 32985 0.7 0.523079
Target:  5'- gUCCUCGGCg--CAGGcgGCCgGGGUGGc- -3'
miRNA:   3'- -AGGAGCUGuaaGUCC--UGG-CCCACUua -5'
26383 5' -53.7 NC_005345.2 + 28605 0.72 0.42021
Target:  5'- aCCUCGACGUUCAccGCCGGGa---- -3'
miRNA:   3'- aGGAGCUGUAAGUccUGGCCCacuua -5'
26383 5' -53.7 NC_005345.2 + 29995 0.73 0.364659
Target:  5'- gUCCUCGGC---CGGGGuCCGGGUGGc- -3'
miRNA:   3'- -AGGAGCUGuaaGUCCU-GGCCCACUua -5'
26383 5' -53.7 NC_005345.2 + 36896 0.75 0.276653
Target:  5'- gCUcgCGACGaagCGGGACCGGGUGAGc -3'
miRNA:   3'- aGGa-GCUGUaa-GUCCUGGCCCACUUa -5'
26383 5' -53.7 NC_005345.2 + 41520 0.78 0.170243
Target:  5'- gCCUCGAUGUUCuGGGCCGGGUcGGc- -3'
miRNA:   3'- aGGAGCUGUAAGuCCUGGCCCA-CUua -5'
26383 5' -53.7 NC_005345.2 + 26189 1.06 0.002005
Target:  5'- gUCCUCGACAUUCAGGACCGGGUGAAUc -3'
miRNA:   3'- -AGGAGCUGUAAGUCCUGGCCCACUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.