miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26384 3' -55 NC_005345.2 + 35207 0.65 0.741372
Target:  5'- gGCGCCc-CGUugCUGUucaggcggccguGgGCGGCUGGu -3'
miRNA:   3'- -UGCGGcuGCAugGACA------------UgCGCUGACU- -5'
26384 3' -55 NC_005345.2 + 45330 0.65 0.741372
Target:  5'- -aGCCGGCG-AgCUGcUGCGCGGCc-- -3'
miRNA:   3'- ugCGGCUGCaUgGAC-AUGCGCUGacu -5'
26384 3' -55 NC_005345.2 + 3794 0.66 0.730819
Target:  5'- cGCGCCGcACGguccacACCgGUGCGaCGACg-- -3'
miRNA:   3'- -UGCGGC-UGCa-----UGGaCAUGC-GCUGacu -5'
26384 3' -55 NC_005345.2 + 8395 0.66 0.697526
Target:  5'- gGC-CCGACGaGCCgcugccgGUcgacgggGCGCGGCUGGa -3'
miRNA:   3'- -UGcGGCUGCaUGGa------CA-------UGCGCUGACU- -5'
26384 3' -55 NC_005345.2 + 33876 0.66 0.697526
Target:  5'- gGCGUCGACGUgggggacGCCgcucGCGCGGCcGGg -3'
miRNA:   3'- -UGCGGCUGCA-------UGGaca-UGCGCUGaCU- -5'
26384 3' -55 NC_005345.2 + 42808 0.67 0.676796
Target:  5'- gGCGCCGcuCGUGCC-GUACGaGACg-- -3'
miRNA:   3'- -UGCGGCu-GCAUGGaCAUGCgCUGacu -5'
26384 3' -55 NC_005345.2 + 4611 0.67 0.665818
Target:  5'- cCGCucgCGGCGUACCUGgucgaGCuGCUGAa -3'
miRNA:   3'- uGCG---GCUGCAUGGACaug--CGcUGACU- -5'
26384 3' -55 NC_005345.2 + 33554 0.67 0.652605
Target:  5'- gACGCuCGGCGcagGCCUGaaaaccggacuCGCGGCUGu -3'
miRNA:   3'- -UGCG-GCUGCa--UGGACau---------GCGCUGACu -5'
26384 3' -55 NC_005345.2 + 15977 0.67 0.642675
Target:  5'- uCGCCGAggucgucCGUACCucUGUGgGCGACg-- -3'
miRNA:   3'- uGCGGCU-------GCAUGG--ACAUgCGCUGacu -5'
26384 3' -55 NC_005345.2 + 23613 0.68 0.610665
Target:  5'- gACGCCGGCGgACCgg-GCaCGGCUGc -3'
miRNA:   3'- -UGCGGCUGCaUGGacaUGcGCUGACu -5'
26384 3' -55 NC_005345.2 + 5921 0.68 0.566814
Target:  5'- uACGCCGGgacCGgugACCUGUGggUGUGGCUGc -3'
miRNA:   3'- -UGCGGCU---GCa--UGGACAU--GCGCUGACu -5'
26384 3' -55 NC_005345.2 + 47466 0.69 0.555963
Target:  5'- cUGUCGGCG-ACCUGUGgGCGAUg-- -3'
miRNA:   3'- uGCGGCUGCaUGGACAUgCGCUGacu -5'
26384 3' -55 NC_005345.2 + 23335 0.69 0.545174
Target:  5'- cGCGCCGACGaGCaUGUACccggcCGACUGu -3'
miRNA:   3'- -UGCGGCUGCaUGgACAUGc----GCUGACu -5'
26384 3' -55 NC_005345.2 + 14165 0.69 0.545174
Target:  5'- gGCGCCGA-GUACCUGcACGCccucGACg-- -3'
miRNA:   3'- -UGCGGCUgCAUGGACaUGCG----CUGacu -5'
26384 3' -55 NC_005345.2 + 8769 0.7 0.50277
Target:  5'- -gGCUGGCGUGCCacacgacccgGUGCGCGcacCUGAc -3'
miRNA:   3'- ugCGGCUGCAUGGa---------CAUGCGCu--GACU- -5'
26384 3' -55 NC_005345.2 + 19184 0.7 0.49239
Target:  5'- cCGUCGACGUGCaC-GUACGCGAUc-- -3'
miRNA:   3'- uGCGGCUGCAUG-GaCAUGCGCUGacu -5'
26384 3' -55 NC_005345.2 + 3264 0.72 0.394813
Target:  5'- gUGCCGAgGUACCccGUGCGCaGCUGc -3'
miRNA:   3'- uGCGGCUgCAUGGa-CAUGCGcUGACu -5'
26384 3' -55 NC_005345.2 + 45564 0.73 0.342588
Target:  5'- -gGCCGACG-ACCcgcagGUGCGCGACa-- -3'
miRNA:   3'- ugCGGCUGCaUGGa----CAUGCGCUGacu -5'
26384 3' -55 NC_005345.2 + 23916 0.73 0.342588
Target:  5'- aGCGCCGACGaGCCgucGUGCGUGAg--- -3'
miRNA:   3'- -UGCGGCUGCaUGGa--CAUGCGCUgacu -5'
26384 3' -55 NC_005345.2 + 9198 0.74 0.295532
Target:  5'- gACGCCGGgGUGCC-GUACGCGuACg-- -3'
miRNA:   3'- -UGCGGCUgCAUGGaCAUGCGC-UGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.