Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26384 | 3' | -55 | NC_005345.2 | + | 26473 | 1.08 | 0.001168 |
Target: 5'- aACGCCGACGUACCUGUACGCGACUGAc -3' miRNA: 3'- -UGCGGCUGCAUGGACAUGCGCUGACU- -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 3876 | 0.75 | 0.240829 |
Target: 5'- gACGCCGA-GUGCCUGcaGCGCGGCgagGGc -3' miRNA: 3'- -UGCGGCUgCAUGGACa-UGCGCUGa--CU- -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 9198 | 0.74 | 0.295532 |
Target: 5'- gACGCCGGgGUGCC-GUACGCGuACg-- -3' miRNA: 3'- -UGCGGCUgCAUGGaCAUGCGC-UGacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 34607 | 0.74 | 0.288197 |
Target: 5'- aGCGCCGGCGUcaACUggGUGCGCGAgUa- -3' miRNA: 3'- -UGCGGCUGCA--UGGa-CAUGCGCUgAcu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 45564 | 0.73 | 0.342588 |
Target: 5'- -gGCCGACG-ACCcgcagGUGCGCGACa-- -3' miRNA: 3'- ugCGGCUGCaUGGa----CAUGCGCUGacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 23916 | 0.73 | 0.342588 |
Target: 5'- aGCGCCGACGaGCCgucGUGCGUGAg--- -3' miRNA: 3'- -UGCGGCUGCaUGGa--CAUGCGCUgacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 3264 | 0.72 | 0.394813 |
Target: 5'- gUGCCGAgGUACCccGUGCGCaGCUGc -3' miRNA: 3'- uGCGGCUgCAUGGa-CAUGCGcUGACu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 8769 | 0.7 | 0.50277 |
Target: 5'- -gGCUGGCGUGCCacacgacccgGUGCGCGcacCUGAc -3' miRNA: 3'- ugCGGCUGCAUGGa---------CAUGCGCu--GACU- -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 19184 | 0.7 | 0.49239 |
Target: 5'- cCGUCGACGUGCaC-GUACGCGAUc-- -3' miRNA: 3'- uGCGGCUGCAUG-GaCAUGCGCUGacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 23335 | 0.69 | 0.545174 |
Target: 5'- cGCGCCGACGaGCaUGUACccggcCGACUGu -3' miRNA: 3'- -UGCGGCUGCaUGgACAUGc----GCUGACu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 14165 | 0.69 | 0.545174 |
Target: 5'- gGCGCCGA-GUACCUGcACGCccucGACg-- -3' miRNA: 3'- -UGCGGCUgCAUGGACaUGCG----CUGacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 47466 | 0.69 | 0.555963 |
Target: 5'- cUGUCGGCG-ACCUGUGgGCGAUg-- -3' miRNA: 3'- uGCGGCUGCaUGGACAUgCGCUGacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 23613 | 0.68 | 0.610665 |
Target: 5'- gACGCCGGCGgACCgg-GCaCGGCUGc -3' miRNA: 3'- -UGCGGCUGCaUGGacaUGcGCUGACu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 5921 | 0.68 | 0.566814 |
Target: 5'- uACGCCGGgacCGgugACCUGUGggUGUGGCUGc -3' miRNA: 3'- -UGCGGCU---GCa--UGGACAU--GCGCUGACu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 15977 | 0.67 | 0.642675 |
Target: 5'- uCGCCGAggucgucCGUACCucUGUGgGCGACg-- -3' miRNA: 3'- uGCGGCU-------GCAUGG--ACAUgCGCUGacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 33554 | 0.67 | 0.652605 |
Target: 5'- gACGCuCGGCGcagGCCUGaaaaccggacuCGCGGCUGu -3' miRNA: 3'- -UGCG-GCUGCa--UGGACau---------GCGCUGACu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 4611 | 0.67 | 0.665818 |
Target: 5'- cCGCucgCGGCGUACCUGgucgaGCuGCUGAa -3' miRNA: 3'- uGCG---GCUGCAUGGACaug--CGcUGACU- -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 42808 | 0.67 | 0.676796 |
Target: 5'- gGCGCCGcuCGUGCC-GUACGaGACg-- -3' miRNA: 3'- -UGCGGCu-GCAUGGaCAUGCgCUGacu -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 8395 | 0.66 | 0.697526 |
Target: 5'- gGC-CCGACGaGCCgcugccgGUcgacgggGCGCGGCUGGa -3' miRNA: 3'- -UGcGGCUGCaUGGa------CA-------UGCGCUGACU- -5' |
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26384 | 3' | -55 | NC_005345.2 | + | 33876 | 0.66 | 0.697526 |
Target: 5'- gGCGUCGACGUgggggacGCCgcucGCGCGGCcGGg -3' miRNA: 3'- -UGCGGCUGCA-------UGGaca-UGCGCUGaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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