miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26384 5' -56.8 NC_005345.2 + 45358 0.66 0.643171
Target:  5'- --cCGGUGUGGAC-CGugCGGCGCg- -3'
miRNA:   3'- guaGUCACGCCUGuGCuaGCCGCGgg -5'
26384 5' -56.8 NC_005345.2 + 895 0.66 0.643171
Target:  5'- gCAUCAGUucgucCGGAUGCuucgcCGGCGCCUc -3'
miRNA:   3'- -GUAGUCAc----GCCUGUGcua--GCCGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 2547 0.66 0.643171
Target:  5'- ------cGCGGugGCGAcggCGaGUGCCCg -3'
miRNA:   3'- guagucaCGCCugUGCUa--GC-CGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 19087 0.66 0.64208
Target:  5'- gAUC-GUGCGGGC-CGugccguggcugauGUgGGCGCUCa -3'
miRNA:   3'- gUAGuCACGCCUGuGC-------------UAgCCGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 26797 0.66 0.632261
Target:  5'- aCGUCGcccGUGCGGcaGCGAcCcGCGCCCc -3'
miRNA:   3'- -GUAGU---CACGCCugUGCUaGcCGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 35436 0.66 0.632261
Target:  5'- ----cGUGUGGcGCACGAUCcuGuCGCCCg -3'
miRNA:   3'- guaguCACGCC-UGUGCUAGc-C-GCGGG- -5'
26384 5' -56.8 NC_005345.2 + 10668 0.66 0.632261
Target:  5'- --cCGGUG-GGGCGCGGcgCGGgaagUGCCCg -3'
miRNA:   3'- guaGUCACgCCUGUGCUa-GCC----GCGGG- -5'
26384 5' -56.8 NC_005345.2 + 26874 0.66 0.632261
Target:  5'- aCAgcggCGGUGCGGucgaugggugagGCGCugcaggCGGCGCUCg -3'
miRNA:   3'- -GUa---GUCACGCC------------UGUGcua---GCCGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 19100 0.66 0.621351
Target:  5'- cCGUCGGUGUcgucGGcccACGCG-UgGGCGCCg -3'
miRNA:   3'- -GUAGUCACG----CC---UGUGCuAgCCGCGGg -5'
26384 5' -56.8 NC_005345.2 + 27004 0.66 0.621351
Target:  5'- --gCGGgacGCGGACGCGGUCGaGUuCCUc -3'
miRNA:   3'- guaGUCa--CGCCUGUGCUAGC-CGcGGG- -5'
26384 5' -56.8 NC_005345.2 + 36508 0.66 0.621351
Target:  5'- --cCAGUGCGcccGCucCGAggccCGGUGCCCg -3'
miRNA:   3'- guaGUCACGCc--UGu-GCUa---GCCGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 41811 0.66 0.621351
Target:  5'- ------cGCGGGCcacaccgcguGCGAcUCGGCGUCCg -3'
miRNA:   3'- guagucaCGCCUG----------UGCU-AGCCGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 28646 0.66 0.618079
Target:  5'- --cCGGggcaGCGGAaagccccgaccgaaCACGGUCGGgGCCa -3'
miRNA:   3'- guaGUCa---CGCCU--------------GUGCUAGCCgCGGg -5'
26384 5' -56.8 NC_005345.2 + 4275 0.66 0.610451
Target:  5'- --gCGGUGCGGGCA-GcUCGG-GCUCg -3'
miRNA:   3'- guaGUCACGCCUGUgCuAGCCgCGGG- -5'
26384 5' -56.8 NC_005345.2 + 21226 0.66 0.610451
Target:  5'- uCGUCcGUGuCGGAguCG-UCGGCGUCg -3'
miRNA:   3'- -GUAGuCAC-GCCUguGCuAGCCGCGGg -5'
26384 5' -56.8 NC_005345.2 + 23364 0.66 0.610451
Target:  5'- -cUgGGaGCGGGC-CGA--GGCGCCCg -3'
miRNA:   3'- guAgUCaCGCCUGuGCUagCCGCGGG- -5'
26384 5' -56.8 NC_005345.2 + 41881 0.66 0.610451
Target:  5'- gAUCGc-GCGGGCgGCGAcgcuugucgguUCGGCcGCCCg -3'
miRNA:   3'- gUAGUcaCGCCUG-UGCU-----------AGCCG-CGGG- -5'
26384 5' -56.8 NC_005345.2 + 29726 0.66 0.603919
Target:  5'- --cCGGUGCGaccGACGCGGcgcagccgaccgagcUCGGCGCg- -3'
miRNA:   3'- guaGUCACGC---CUGUGCU---------------AGCCGCGgg -5'
26384 5' -56.8 NC_005345.2 + 38051 0.66 0.600656
Target:  5'- gCAUCGGaucGCGGugGCGGggauugcgccgccgGGCGCCa -3'
miRNA:   3'- -GUAGUCa--CGCCugUGCUag------------CCGCGGg -5'
26384 5' -56.8 NC_005345.2 + 25083 0.66 0.599568
Target:  5'- aCGUC---GCGGACugGGaagCGGCGUUCg -3'
miRNA:   3'- -GUAGucaCGCCUGugCUa--GCCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.