miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26385 3' -56.2 NC_005345.2 + 4588 0.66 0.669907
Target:  5'- --gUGAUCGCCgCGaACGCAGCGcGg-- -3'
miRNA:   3'- cguGCUAGCGGaGC-UGCGUCGC-Caug -5'
26385 3' -56.2 NC_005345.2 + 19702 0.66 0.669907
Target:  5'- -gACGAguacCGCCUCGACGCcgaGG-ACg -3'
miRNA:   3'- cgUGCUa---GCGGAGCUGCGucgCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 46018 0.66 0.669907
Target:  5'- gGCACGGcugugcaguggCGCCUCGGCGC-GaaGUAUg -3'
miRNA:   3'- -CGUGCUa----------GCGGAGCUGCGuCgcCAUG- -5'
26385 3' -56.2 NC_005345.2 + 18979 0.66 0.669907
Target:  5'- cGCAUgGGUCGCCgcuGGC-CGGCGGgACg -3'
miRNA:   3'- -CGUG-CUAGCGGag-CUGcGUCGCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 36459 0.66 0.667722
Target:  5'- gGCuCGcUCGCCUCGGCcuacaaccgaccCGGCgGGUACg -3'
miRNA:   3'- -CGuGCuAGCGGAGCUGc-----------GUCG-CCAUG- -5'
26385 3' -56.2 NC_005345.2 + 4246 0.66 0.658971
Target:  5'- uCACGGcUCGggcugCUCGGCGaacacCGGCGGUGCg -3'
miRNA:   3'- cGUGCU-AGCg----GAGCUGC-----GUCGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 41292 0.66 0.658971
Target:  5'- uGCugGGgcCGCCUCGgugccgGCGCcGGCGGcuggACg -3'
miRNA:   3'- -CGugCUa-GCGGAGC------UGCG-UCGCCa---UG- -5'
26385 3' -56.2 NC_005345.2 + 34725 0.66 0.648009
Target:  5'- aGCGCGAccucgaUCGCCcggcaGGCGuCGGCGacGUGCa -3'
miRNA:   3'- -CGUGCU------AGCGGag---CUGC-GUCGC--CAUG- -5'
26385 3' -56.2 NC_005345.2 + 41528 0.66 0.648009
Target:  5'- aGCGCGAgCGUCUCGGCGaccUGGUcgACg -3'
miRNA:   3'- -CGUGCUaGCGGAGCUGCgucGCCA--UG- -5'
26385 3' -56.2 NC_005345.2 + 6672 0.66 0.648009
Target:  5'- -gGCGAUCuCCUCGACGaCGGCcucgGCg -3'
miRNA:   3'- cgUGCUAGcGGAGCUGC-GUCGcca-UG- -5'
26385 3' -56.2 NC_005345.2 + 9796 0.66 0.637034
Target:  5'- -aGCGuguUCGCCgcugUGuCGCGGCcGGUGCc -3'
miRNA:   3'- cgUGCu--AGCGGa---GCuGCGUCG-CCAUG- -5'
26385 3' -56.2 NC_005345.2 + 9396 0.66 0.637034
Target:  5'- uCGCcGUCGUCgacggcgCGugGCAGCGGg-- -3'
miRNA:   3'- cGUGcUAGCGGa------GCugCGUCGCCaug -5'
26385 3' -56.2 NC_005345.2 + 12341 0.66 0.637034
Target:  5'- aGCAUGAggCGCUUCGucagcuGCGCuGCGGcugUGCc -3'
miRNA:   3'- -CGUGCUa-GCGGAGC------UGCGuCGCC---AUG- -5'
26385 3' -56.2 NC_005345.2 + 32584 0.66 0.637034
Target:  5'- aCGCGAUCGUCgCGACGguGagcagccaccCGGUGu -3'
miRNA:   3'- cGUGCUAGCGGaGCUGCguC----------GCCAUg -5'
26385 3' -56.2 NC_005345.2 + 35641 0.66 0.635936
Target:  5'- aCACGAUCGacgggugCUCGcCGCGccaccgcaccgacGCGGUGCc -3'
miRNA:   3'- cGUGCUAGCg------GAGCuGCGU-------------CGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 9063 0.66 0.63374
Target:  5'- gGCGCGG-CGCCauugcugcccgcggUCGACGguGaCGGUc- -3'
miRNA:   3'- -CGUGCUaGCGG--------------AGCUGCguC-GCCAug -5'
26385 3' -56.2 NC_005345.2 + 17333 0.66 0.626054
Target:  5'- aGCugccUCGCCUCGACGUcgucgaggucGGCGG-ACu -3'
miRNA:   3'- -CGugcuAGCGGAGCUGCG----------UCGCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 30555 0.66 0.626054
Target:  5'- gGCGcCGAcCGCuUUCGACcCGGCGGUGu -3'
miRNA:   3'- -CGU-GCUaGCG-GAGCUGcGUCGCCAUg -5'
26385 3' -56.2 NC_005345.2 + 36415 0.66 0.626054
Target:  5'- uCGCGAacaucuaCGCCUCGAU---GCGGUACg -3'
miRNA:   3'- cGUGCUa------GCGGAGCUGcguCGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 25011 0.66 0.626054
Target:  5'- cCGCGGUCGCCgaGGCGUucGCGacGUACg -3'
miRNA:   3'- cGUGCUAGCGGagCUGCGu-CGC--CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.