miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26385 3' -56.2 NC_005345.2 + 17333 0.66 0.626054
Target:  5'- aGCugccUCGCCUCGACGUcgucgaggucGGCGG-ACu -3'
miRNA:   3'- -CGugcuAGCGGAGCUGCG----------UCGCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 38376 0.66 0.615079
Target:  5'- aGCGCGGcUGUCUCGACGgcCGGCaGGgGCu -3'
miRNA:   3'- -CGUGCUaGCGGAGCUGC--GUCG-CCaUG- -5'
26385 3' -56.2 NC_005345.2 + 29910 0.66 0.613982
Target:  5'- uCGCGGUCGCCgagcaccUCGAagaGCAGgGGa-- -3'
miRNA:   3'- cGUGCUAGCGG-------AGCUg--CGUCgCCaug -5'
26385 3' -56.2 NC_005345.2 + 45319 0.67 0.604119
Target:  5'- cGCACGc-CGCCgaccuCGCAGCGG-ACg -3'
miRNA:   3'- -CGUGCuaGCGGagcu-GCGUCGCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 26520 0.67 0.604119
Target:  5'- aCACGAUCGgcgcCCUCGAcauccugcaCGUGGCgaaGGUGCg -3'
miRNA:   3'- cGUGCUAGC----GGAGCU---------GCGUCG---CCAUG- -5'
26385 3' -56.2 NC_005345.2 + 22796 0.67 0.604119
Target:  5'- cGCGCGAU--CCUCGGCGgggGGCGGgucugACa -3'
miRNA:   3'- -CGUGCUAgcGGAGCUGCg--UCGCCa----UG- -5'
26385 3' -56.2 NC_005345.2 + 16766 0.67 0.593183
Target:  5'- cGCACGuUCGUCcUGugGCGGC-GUAUg -3'
miRNA:   3'- -CGUGCuAGCGGaGCugCGUCGcCAUG- -5'
26385 3' -56.2 NC_005345.2 + 25236 0.67 0.593183
Target:  5'- cGCACGAcgGCUcgUCGGCGCucguGCGGcACc -3'
miRNA:   3'- -CGUGCUagCGG--AGCUGCGu---CGCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 16181 0.67 0.593183
Target:  5'- cGCGCaGGUCgGCCUCGACuGCcucGCcGUGCu -3'
miRNA:   3'- -CGUG-CUAG-CGGAGCUG-CGu--CGcCAUG- -5'
26385 3' -56.2 NC_005345.2 + 29283 0.67 0.592091
Target:  5'- cGCGCGGuucgaggUCGCC-CGAgGCAGCGc-GCu -3'
miRNA:   3'- -CGUGCU-------AGCGGaGCUgCGUCGCcaUG- -5'
26385 3' -56.2 NC_005345.2 + 864 0.67 0.582279
Target:  5'- cGCGCGGUaUGCC-CGACGCAucGCaGGgaacgGCg -3'
miRNA:   3'- -CGUGCUA-GCGGaGCUGCGU--CG-CCa----UG- -5'
26385 3' -56.2 NC_005345.2 + 37459 0.67 0.582279
Target:  5'- gGCcguCGAUcCGCCUgCaGCGCgggcgAGCGGUACg -3'
miRNA:   3'- -CGu--GCUA-GCGGA-GcUGCG-----UCGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 25147 0.67 0.582279
Target:  5'- aGCGCGAUCGCgC-CGACGaaCGGCGa--- -3'
miRNA:   3'- -CGUGCUAGCG-GaGCUGC--GUCGCcaug -5'
26385 3' -56.2 NC_005345.2 + 41268 0.67 0.582279
Target:  5'- cGUGCGc-CGCCUCGGCGUcccacggcaGGCuGUACa -3'
miRNA:   3'- -CGUGCuaGCGGAGCUGCG---------UCGcCAUG- -5'
26385 3' -56.2 NC_005345.2 + 45856 0.67 0.571417
Target:  5'- cGC-CGA-CGcCCUCGACGUGGaCGGcACg -3'
miRNA:   3'- -CGuGCUaGC-GGAGCUGCGUC-GCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 32290 0.67 0.570334
Target:  5'- cGCGCGuUCGuCCUCGAacUGCGggacggcGCGGUGa -3'
miRNA:   3'- -CGUGCuAGC-GGAGCU--GCGU-------CGCCAUg -5'
26385 3' -56.2 NC_005345.2 + 29348 0.67 0.570334
Target:  5'- aGCGCucGUCGCCgUCGGCGUAGCcgagccacggcucGGUGu -3'
miRNA:   3'- -CGUGc-UAGCGG-AGCUGCGUCG-------------CCAUg -5'
26385 3' -56.2 NC_005345.2 + 22002 0.67 0.560605
Target:  5'- cGCGCag-CGCCUCGG-GCAGCucgacgccggccGGUGCc -3'
miRNA:   3'- -CGUGcuaGCGGAGCUgCGUCG------------CCAUG- -5'
26385 3' -56.2 NC_005345.2 + 25783 0.67 0.549849
Target:  5'- aGCuCGggCGCCUCGgcccgcucccaGCGCAGCacGGUcuGCg -3'
miRNA:   3'- -CGuGCuaGCGGAGC-----------UGCGUCG--CCA--UG- -5'
26385 3' -56.2 NC_005345.2 + 26604 0.67 0.549849
Target:  5'- uCGCGcUCGCUgCGGCGCAGgcCGGUGu -3'
miRNA:   3'- cGUGCuAGCGGaGCUGCGUC--GCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.