miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26385 3' -56.2 NC_005345.2 + 720 0.68 0.506501
Target:  5'- uGCuccaGAUCGCCcacgccgUCGACGUGccgcucGCGGUGCu -3'
miRNA:   3'- -CGug--CUAGCGG-------AGCUGCGU------CGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 864 0.67 0.582279
Target:  5'- cGCGCGGUaUGCC-CGACGCAucGCaGGgaacgGCg -3'
miRNA:   3'- -CGUGCUA-GCGGaGCUGCGU--CG-CCa----UG- -5'
26385 3' -56.2 NC_005345.2 + 2889 0.75 0.203758
Target:  5'- cGCgGCGGUgGCCUCGACG-AGCGGaucgGCg -3'
miRNA:   3'- -CG-UGCUAgCGGAGCUGCgUCGCCa---UG- -5'
26385 3' -56.2 NC_005345.2 + 3339 0.7 0.398649
Target:  5'- uCACGGUCGCgacgacggacgacCUCG-CGCAGUGGUucuACg -3'
miRNA:   3'- cGUGCUAGCG-------------GAGCuGCGUCGCCA---UG- -5'
26385 3' -56.2 NC_005345.2 + 4246 0.66 0.658971
Target:  5'- uCACGGcUCGggcugCUCGGCGaacacCGGCGGUGCg -3'
miRNA:   3'- cGUGCU-AGCg----GAGCUGC-----GUCGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 4543 0.68 0.528539
Target:  5'- gGCACGA-C-CCggaCGACgGCAGCGuGUACg -3'
miRNA:   3'- -CGUGCUaGcGGa--GCUG-CGUCGC-CAUG- -5'
26385 3' -56.2 NC_005345.2 + 4588 0.66 0.669907
Target:  5'- --gUGAUCGCCgCGaACGCAGCGcGg-- -3'
miRNA:   3'- cguGCUAGCGGaGC-UGCGUCGC-Caug -5'
26385 3' -56.2 NC_005345.2 + 5251 0.76 0.178204
Target:  5'- uGCGCGc-CGCCguggCGAUGCAGCGGgACg -3'
miRNA:   3'- -CGUGCuaGCGGa---GCUGCGUCGCCaUG- -5'
26385 3' -56.2 NC_005345.2 + 5319 0.69 0.44689
Target:  5'- aGCAUGA-CGCCggCGaaGCGCugcaguGCGGUGCc -3'
miRNA:   3'- -CGUGCUaGCGGa-GC--UGCGu-----CGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 6351 0.68 0.507542
Target:  5'- gGCACGAgcggCGCCgggUUGGcCGCGGUGGcguUGCg -3'
miRNA:   3'- -CGUGCUa---GCGG---AGCU-GCGUCGCC---AUG- -5'
26385 3' -56.2 NC_005345.2 + 6672 0.66 0.648009
Target:  5'- -gGCGAUCuCCUCGACGaCGGCcucgGCg -3'
miRNA:   3'- cgUGCUAGcGGAGCUGC-GUCGcca-UG- -5'
26385 3' -56.2 NC_005345.2 + 6917 0.72 0.330848
Target:  5'- cGCcCGuGUCGaCCUCGGCGC-GCGcGUACa -3'
miRNA:   3'- -CGuGC-UAGC-GGAGCUGCGuCGC-CAUG- -5'
26385 3' -56.2 NC_005345.2 + 6964 0.7 0.418111
Target:  5'- -gGCGAUCGCUUCGcUGCGGCaGGg-- -3'
miRNA:   3'- cgUGCUAGCGGAGCuGCGUCG-CCaug -5'
26385 3' -56.2 NC_005345.2 + 7284 0.82 0.072733
Target:  5'- cGCGCGAUCGCCgaggCGAacCGCAggacgagccGCGGUGCg -3'
miRNA:   3'- -CGUGCUAGCGGa---GCU--GCGU---------CGCCAUG- -5'
26385 3' -56.2 NC_005345.2 + 8747 0.71 0.338944
Target:  5'- cGUACGGaCGCgUCGGCGguGUGGcugGCg -3'
miRNA:   3'- -CGUGCUaGCGgAGCUGCguCGCCa--UG- -5'
26385 3' -56.2 NC_005345.2 + 8966 0.69 0.466677
Target:  5'- uGCACGccgGCCUCGAuCGCAGCuGcGCg -3'
miRNA:   3'- -CGUGCuagCGGAGCU-GCGUCGcCaUG- -5'
26385 3' -56.2 NC_005345.2 + 9063 0.66 0.63374
Target:  5'- gGCGCGG-CGCCauugcugcccgcggUCGACGguGaCGGUc- -3'
miRNA:   3'- -CGUGCUaGCGG--------------AGCUGCguC-GCCAug -5'
26385 3' -56.2 NC_005345.2 + 9396 0.66 0.637034
Target:  5'- uCGCcGUCGUCgacggcgCGugGCAGCGGg-- -3'
miRNA:   3'- cGUGcUAGCGGa------GCugCGUCGCCaug -5'
26385 3' -56.2 NC_005345.2 + 9738 0.73 0.271237
Target:  5'- aGCG-GGUCgGCCUCGAUGCuGCGGUu- -3'
miRNA:   3'- -CGUgCUAG-CGGAGCUGCGuCGCCAug -5'
26385 3' -56.2 NC_005345.2 + 9796 0.66 0.637034
Target:  5'- -aGCGuguUCGCCgcugUGuCGCGGCcGGUGCc -3'
miRNA:   3'- cgUGCu--AGCGGa---GCuGCGUCG-CCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.