miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26385 5' -55.7 NC_005345.2 + 29397 0.66 0.667043
Target:  5'- cUcgGCCGc--CGCCUCGGCcucgGUCGCc -3'
miRNA:   3'- aGuaCGGCuaaGUGGGGCCGa---CAGUG- -5'
26385 5' -55.7 NC_005345.2 + 13214 0.66 0.644835
Target:  5'- ---cGgCGAgcacaccccgCGCCCCGGC-GUCACg -3'
miRNA:   3'- aguaCgGCUaa--------GUGGGGCCGaCAGUG- -5'
26385 5' -55.7 NC_005345.2 + 3263 0.66 0.644835
Target:  5'- -gGUGCCGAggUACCCCGuGCg--CAg -3'
miRNA:   3'- agUACGGCUaaGUGGGGC-CGacaGUg -5'
26385 5' -55.7 NC_005345.2 + 23437 0.66 0.644835
Target:  5'- -gGUGUCgGGUUCGCCguCCGGaccgGUCACg -3'
miRNA:   3'- agUACGG-CUAAGUGG--GGCCga--CAGUG- -5'
26385 5' -55.7 NC_005345.2 + 45368 0.66 0.633708
Target:  5'- cCGUGCgGcgcggguccgcGUUCACCUCGGCcGUCcaGCg -3'
miRNA:   3'- aGUACGgC-----------UAAGUGGGGCCGaCAG--UG- -5'
26385 5' -55.7 NC_005345.2 + 1265 0.66 0.633708
Target:  5'- aUCuUGUCGAggugCGCCUCGGCUGcCu- -3'
miRNA:   3'- -AGuACGGCUaa--GUGGGGCCGACaGug -5'
26385 5' -55.7 NC_005345.2 + 23484 0.66 0.62258
Target:  5'- gCAgGCCGA-UCACUUCGGCUcGUC-Cg -3'
miRNA:   3'- aGUaCGGCUaAGUGGGGCCGA-CAGuG- -5'
26385 5' -55.7 NC_005345.2 + 41901 0.66 0.61146
Target:  5'- --uUGUCGGUUCGgccgcccgguCCCCGGCaUGaUCACc -3'
miRNA:   3'- aguACGGCUAAGU----------GGGGCCG-AC-AGUG- -5'
26385 5' -55.7 NC_005345.2 + 36502 0.66 0.61146
Target:  5'- aCGgcgGCCGAccgCGCCCCGGCgaacUgGCg -3'
miRNA:   3'- aGUa--CGGCUaa-GUGGGGCCGac--AgUG- -5'
26385 5' -55.7 NC_005345.2 + 37718 0.67 0.600358
Target:  5'- gCGUGCCGAUUCcggGCaaCCuGCUGUCGu -3'
miRNA:   3'- aGUACGGCUAAG---UGg-GGcCGACAGUg -5'
26385 5' -55.7 NC_005345.2 + 14388 0.67 0.589285
Target:  5'- aCcgGCCGGU--GCCgauCCGGCUG-CACg -3'
miRNA:   3'- aGuaCGGCUAagUGG---GGCCGACaGUG- -5'
26385 5' -55.7 NC_005345.2 + 38354 0.67 0.578248
Target:  5'- aUCGaGCCGGUcCGCCUgccgcagcgCGGCUGUCuCg -3'
miRNA:   3'- -AGUaCGGCUAaGUGGG---------GCCGACAGuG- -5'
26385 5' -55.7 NC_005345.2 + 41861 0.67 0.567256
Target:  5'- gUCcUG-CGGUUCGCCUCGGCgaUCGCg -3'
miRNA:   3'- -AGuACgGCUAAGUGGGGCCGacAGUG- -5'
26385 5' -55.7 NC_005345.2 + 6456 0.67 0.567256
Target:  5'- ---aGCCGggUCGCgCCCGGCauccacagGUCAg -3'
miRNA:   3'- aguaCGGCuaAGUG-GGGCCGa-------CAGUg -5'
26385 5' -55.7 NC_005345.2 + 20360 0.67 0.567256
Target:  5'- cCGUGCgUGAgcaUCGCCCCGGacggGUCGa -3'
miRNA:   3'- aGUACG-GCUa--AGUGGGGCCga--CAGUg -5'
26385 5' -55.7 NC_005345.2 + 9399 0.67 0.556319
Target:  5'- uUCAgccUGCCGcAggCGCagcgggaCCGGCUGUCAa -3'
miRNA:   3'- -AGU---ACGGC-UaaGUGg------GGCCGACAGUg -5'
26385 5' -55.7 NC_005345.2 + 29144 0.67 0.556319
Target:  5'- cUCGUGCCcgg-CAgCCCGcCUGUCGCc -3'
miRNA:   3'- -AGUACGGcuaaGUgGGGCcGACAGUG- -5'
26385 5' -55.7 NC_005345.2 + 8679 0.67 0.556319
Target:  5'- ---cGCCGA-UCGCCUCccacgGGUUGUCGCc -3'
miRNA:   3'- aguaCGGCUaAGUGGGG-----CCGACAGUG- -5'
26385 5' -55.7 NC_005345.2 + 22413 0.67 0.556319
Target:  5'- aCggGCCGGUUCAUC---GCUGUCACg -3'
miRNA:   3'- aGuaCGGCUAAGUGGggcCGACAGUG- -5'
26385 5' -55.7 NC_005345.2 + 29327 0.68 0.545443
Target:  5'- --cUGUCGGc-CGCCCCGGgUGUCAg -3'
miRNA:   3'- aguACGGCUaaGUGGGGCCgACAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.