miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26385 5' -55.7 NC_005345.2 + 27437 1.1 0.000664
Target:  5'- cUCAUGCCGAUUCACCCCGGCUGUCACu -3'
miRNA:   3'- -AGUACGGCUAAGUGGGGCCGACAGUG- -5'
26385 5' -55.7 NC_005345.2 + 43959 0.74 0.226951
Target:  5'- cCGUGCCGAUgcgugCAgCCCGGCgGcUCGCc -3'
miRNA:   3'- aGUACGGCUAa----GUgGGGCCGaC-AGUG- -5'
26385 5' -55.7 NC_005345.2 + 10225 0.72 0.301662
Target:  5'- -gAUGCgGGUgaaguuccaCGCCCCGGCgGUCACc -3'
miRNA:   3'- agUACGgCUAa--------GUGGGGCCGaCAGUG- -5'
26385 5' -55.7 NC_005345.2 + 23532 0.72 0.325082
Target:  5'- ---cGCCcuGAUUCACgCUCGGCUGUgGCg -3'
miRNA:   3'- aguaCGG--CUAAGUG-GGGCCGACAgUG- -5'
26385 5' -55.7 NC_005345.2 + 30349 0.72 0.325082
Target:  5'- -aGUGCCccggcaACCCCGGCgGUCGCg -3'
miRNA:   3'- agUACGGcuaag-UGGGGCCGaCAGUG- -5'
26385 5' -55.7 NC_005345.2 + 39819 0.71 0.358368
Target:  5'- aCAUGCCGAc-CACCCuCGGCa-UCGCg -3'
miRNA:   3'- aGUACGGCUaaGUGGG-GCCGacAGUG- -5'
26385 5' -55.7 NC_005345.2 + 43611 0.71 0.367053
Target:  5'- gUCAcGCUGAUcaggUCGggccCCCCGGCgggGUCGCg -3'
miRNA:   3'- -AGUaCGGCUA----AGU----GGGGCCGa--CAGUG- -5'
26385 5' -55.7 NC_005345.2 + 28124 0.7 0.43178
Target:  5'- gCGUGCCGAggaacgCACCCgGGCcggcgaacgcGUCGCc -3'
miRNA:   3'- aGUACGGCUaa----GUGGGgCCGa---------CAGUG- -5'
26385 5' -55.7 NC_005345.2 + 8824 0.69 0.44156
Target:  5'- gCcgGCCGGgcucgUCugCCgCGGCUGcggCACg -3'
miRNA:   3'- aGuaCGGCUa----AGugGG-GCCGACa--GUG- -5'
26385 5' -55.7 NC_005345.2 + 16360 0.69 0.44156
Target:  5'- ---cGCCGAgcaUCGCCgCGGC-GUCGCc -3'
miRNA:   3'- aguaCGGCUa--AGUGGgGCCGaCAGUG- -5'
26385 5' -55.7 NC_005345.2 + 19390 0.69 0.461489
Target:  5'- gUCGUGCCGAgcagcgUCGCgCCGaGCUcgGUCGg -3'
miRNA:   3'- -AGUACGGCUa-----AGUGgGGC-CGA--CAGUg -5'
26385 5' -55.7 NC_005345.2 + 16907 0.69 0.461489
Target:  5'- cCGUGCgCGuggUgACCCCGGUcgcgGUCACc -3'
miRNA:   3'- aGUACG-GCua-AgUGGGGCCGa---CAGUG- -5'
26385 5' -55.7 NC_005345.2 + 23944 0.69 0.471631
Target:  5'- aCcgGCCGGgggugaUUCACCgCGggcuGCUGUCGCg -3'
miRNA:   3'- aGuaCGGCU------AAGUGGgGC----CGACAGUG- -5'
26385 5' -55.7 NC_005345.2 + 16236 0.68 0.502704
Target:  5'- ----uCCGAUUC-CCCCGGCUGcgUACc -3'
miRNA:   3'- aguacGGCUAAGuGGGGCCGACa-GUG- -5'
26385 5' -55.7 NC_005345.2 + 38109 0.68 0.51326
Target:  5'- --cUGUCGAUgaUgACCCCGGCUgcggccggggucGUCACc -3'
miRNA:   3'- aguACGGCUA--AgUGGGGCCGA------------CAGUG- -5'
26385 5' -55.7 NC_005345.2 + 29327 0.68 0.545443
Target:  5'- --cUGUCGGc-CGCCCCGGgUGUCAg -3'
miRNA:   3'- aguACGGCUaaGUGGGGCCgACAGUg -5'
26385 5' -55.7 NC_005345.2 + 9399 0.67 0.556319
Target:  5'- uUCAgccUGCCGcAggCGCagcgggaCCGGCUGUCAa -3'
miRNA:   3'- -AGU---ACGGC-UaaGUGg------GGCCGACAGUg -5'
26385 5' -55.7 NC_005345.2 + 22413 0.67 0.556319
Target:  5'- aCggGCCGGUUCAUC---GCUGUCACg -3'
miRNA:   3'- aGuaCGGCUAAGUGGggcCGACAGUG- -5'
26385 5' -55.7 NC_005345.2 + 8679 0.67 0.556319
Target:  5'- ---cGCCGA-UCGCCUCccacgGGUUGUCGCc -3'
miRNA:   3'- aguaCGGCUaAGUGGGG-----CCGACAGUG- -5'
26385 5' -55.7 NC_005345.2 + 29144 0.67 0.556319
Target:  5'- cUCGUGCCcgg-CAgCCCGcCUGUCGCc -3'
miRNA:   3'- -AGUACGGcuaaGUgGGGCcGACAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.