miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26386 3' -53.2 NC_005345.2 + 27183 0.65 0.7863
Target:  5'- cCGGG-CAUCGGCGcgggccgugaucGGCAGCgggucggcgcagcGCUCGCa -3'
miRNA:   3'- -GUCUaGUAGCUGC------------UCGUCGa------------CGAGUG- -5'
26386 3' -53.2 NC_005345.2 + 8198 0.66 0.780138
Target:  5'- cCGGAUgAUCGAccugaaCGAGCAGCgucuUGUcaUCACc -3'
miRNA:   3'- -GUCUAgUAGCU------GCUCGUCG----ACG--AGUG- -5'
26386 3' -53.2 NC_005345.2 + 14323 0.66 0.780138
Target:  5'- -cGAgcaCGUCGGCGAGgGGCagGCgCACg -3'
miRNA:   3'- guCUa--GUAGCUGCUCgUCGa-CGaGUG- -5'
26386 3' -53.2 NC_005345.2 + 20686 0.66 0.780138
Target:  5'- uCAGGUCuucuuGUCGuugcCGAGCAGCUcGCggUACa -3'
miRNA:   3'- -GUCUAG-----UAGCu---GCUCGUCGA-CGa-GUG- -5'
26386 3' -53.2 NC_005345.2 + 38259 0.66 0.780138
Target:  5'- -uGAUCGaUGACGuGCGGgUGCgggCACg -3'
miRNA:   3'- guCUAGUaGCUGCuCGUCgACGa--GUG- -5'
26386 3' -53.2 NC_005345.2 + 18882 0.66 0.780138
Target:  5'- uCGGG-C-UCGACGAGCccGGCcUGCUCGg -3'
miRNA:   3'- -GUCUaGuAGCUGCUCG--UCG-ACGAGUg -5'
26386 3' -53.2 NC_005345.2 + 24886 0.66 0.780138
Target:  5'- -uGAUCggcugccgccuGUCgGACGGGCAcCUGUUCACg -3'
miRNA:   3'- guCUAG-----------UAG-CUGCUCGUcGACGAGUG- -5'
26386 3' -53.2 NC_005345.2 + 5810 0.66 0.76974
Target:  5'- gAGGUCGagcCGuACGcGCAGCaGCUCGCc -3'
miRNA:   3'- gUCUAGUa--GC-UGCuCGUCGaCGAGUG- -5'
26386 3' -53.2 NC_005345.2 + 43056 0.66 0.76974
Target:  5'- gCGGcUCGUCGAUaccccgugcaagGGGUggcccgAGCUGCUCGCc -3'
miRNA:   3'- -GUCuAGUAGCUG------------CUCG------UCGACGAGUG- -5'
26386 3' -53.2 NC_005345.2 + 24545 0.66 0.76974
Target:  5'- -cGA-CAUgucCGACGAGCAGUcGCUCGu -3'
miRNA:   3'- guCUaGUA---GCUGCUCGUCGaCGAGUg -5'
26386 3' -53.2 NC_005345.2 + 2748 0.66 0.768692
Target:  5'- -cGGUCGacaagugccgccuUCgGACGGcGUGGCUGCUCGCc -3'
miRNA:   3'- guCUAGU-------------AG-CUGCU-CGUCGACGAGUG- -5'
26386 3' -53.2 NC_005345.2 + 6032 0.66 0.759189
Target:  5'- -------aCGACGAGCAGCcacugcaGCUCACc -3'
miRNA:   3'- gucuaguaGCUGCUCGUCGa------CGAGUG- -5'
26386 3' -53.2 NC_005345.2 + 27984 0.66 0.759189
Target:  5'- ----cCGUCGACGGGCGGg-GCgUCGCg -3'
miRNA:   3'- gucuaGUAGCUGCUCGUCgaCG-AGUG- -5'
26386 3' -53.2 NC_005345.2 + 19928 0.66 0.759189
Target:  5'- aAGAgCAgcgagaCGACGAGCAGCaGCgCGCc -3'
miRNA:   3'- gUCUaGUa-----GCUGCUCGUCGaCGaGUG- -5'
26386 3' -53.2 NC_005345.2 + 33057 0.66 0.759189
Target:  5'- uGGcgCGagcUCGGCGuguacgugcGGCAGCUGC-CACg -3'
miRNA:   3'- gUCuaGU---AGCUGC---------UCGUCGACGaGUG- -5'
26386 3' -53.2 NC_005345.2 + 43069 0.66 0.748499
Target:  5'- -cGGUCguGUCGuCGGGCAGCaGC-CACu -3'
miRNA:   3'- guCUAG--UAGCuGCUCGUCGaCGaGUG- -5'
26386 3' -53.2 NC_005345.2 + 31519 0.66 0.748499
Target:  5'- gCAGGUCAg-GACGGagaacGCGGCgUGCaUCACa -3'
miRNA:   3'- -GUCUAGUagCUGCU-----CGUCG-ACG-AGUG- -5'
26386 3' -53.2 NC_005345.2 + 36775 0.66 0.748499
Target:  5'- cCGGGUCggcGUCGGCGAucggcacagccGCAGCgcaGCUgACg -3'
miRNA:   3'- -GUCUAG---UAGCUGCU-----------CGUCGa--CGAgUG- -5'
26386 3' -53.2 NC_005345.2 + 28928 0.66 0.748499
Target:  5'- aCGGAguUCAUCGAgCGAcGCAGCUGaCggGCc -3'
miRNA:   3'- -GUCU--AGUAGCU-GCU-CGUCGAC-GagUG- -5'
26386 3' -53.2 NC_005345.2 + 3019 0.66 0.748499
Target:  5'- cCAGuagcCGggCGGCG-GCAGCaUGCUCGCu -3'
miRNA:   3'- -GUCua--GUa-GCUGCuCGUCG-ACGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.