miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26386 5' -61 NC_005345.2 + 37897 0.66 0.427671
Target:  5'- cAUGUaGUGGUCGCCCuucgcgggcuGCGGCAgcgCGGg -3'
miRNA:   3'- -UGCGcCGCUAGUGGG----------CGCCGUa--GCCg -5'
26386 5' -61 NC_005345.2 + 24484 0.66 0.427671
Target:  5'- uCGaCGGcCGGUCccggGCCCGCGGgAUCcuGGUc -3'
miRNA:   3'- uGC-GCC-GCUAG----UGGGCGCCgUAG--CCG- -5'
26386 5' -61 NC_005345.2 + 10470 0.66 0.427671
Target:  5'- cUGCGaGCGcugCACCgugaGCGGCAgaugaaCGGCa -3'
miRNA:   3'- uGCGC-CGCua-GUGGg---CGCCGUa-----GCCG- -5'
26386 5' -61 NC_005345.2 + 27339 0.66 0.427671
Target:  5'- cGCGUGGCGGgg---CGCGGUacuuccgccGUCGGCu -3'
miRNA:   3'- -UGCGCCGCUaguggGCGCCG---------UAGCCG- -5'
26386 5' -61 NC_005345.2 + 48572 0.66 0.427671
Target:  5'- gAUGCGGgcgcCGAUgaGCUCGCGGCG--GGCg -3'
miRNA:   3'- -UGCGCC----GCUAg-UGGGCGCCGUagCCG- -5'
26386 5' -61 NC_005345.2 + 26780 0.66 0.427671
Target:  5'- gUGCGGCgGAUCgugGCCgGCGccGCGUCgcaGGCg -3'
miRNA:   3'- uGCGCCG-CUAG---UGGgCGC--CGUAG---CCG- -5'
26386 5' -61 NC_005345.2 + 41435 0.66 0.427671
Target:  5'- -aGCGGCagcucgUACCgGCGGCAcucgCGGUc -3'
miRNA:   3'- ugCGCCGcua---GUGGgCGCCGUa---GCCG- -5'
26386 5' -61 NC_005345.2 + 15988 0.66 0.427671
Target:  5'- uGCGCGGCG-UCGagguucaUCGCGaGCAggugcUCGGUc -3'
miRNA:   3'- -UGCGCCGCuAGUg------GGCGC-CGU-----AGCCG- -5'
26386 5' -61 NC_005345.2 + 43330 0.66 0.427671
Target:  5'- aGCG-GGCGAgCugCUGCGcGUA-CGGCu -3'
miRNA:   3'- -UGCgCCGCUaGugGGCGC-CGUaGCCG- -5'
26386 5' -61 NC_005345.2 + 32953 0.66 0.427671
Target:  5'- aGCGCgaGGCGGaCGCCgGCcGCGUCcGCg -3'
miRNA:   3'- -UGCG--CCGCUaGUGGgCGcCGUAGcCG- -5'
26386 5' -61 NC_005345.2 + 22162 0.66 0.418509
Target:  5'- cUGUGGCGAgcagCGCCgGCgcuGGgAUCGGg -3'
miRNA:   3'- uGCGCCGCUa---GUGGgCG---CCgUAGCCg -5'
26386 5' -61 NC_005345.2 + 14351 0.66 0.418509
Target:  5'- gGCGUGcGCGAggACCgCGaccCGGCGcagcUCGGCg -3'
miRNA:   3'- -UGCGC-CGCUagUGG-GC---GCCGU----AGCCG- -5'
26386 5' -61 NC_005345.2 + 38047 0.66 0.413069
Target:  5'- uGCGCGGCGAcccaacuuccgaccgUgACCCacaGGCcgCGcGCa -3'
miRNA:   3'- -UGCGCCGCU---------------AgUGGGcg-CCGuaGC-CG- -5'
26386 5' -61 NC_005345.2 + 3251 0.66 0.412167
Target:  5'- cACGCGGCGcUCggugccgagguACCCcgugcgcagcugcguGCcguccacgucgagGGCGUCGGCg -3'
miRNA:   3'- -UGCGCCGCuAG-----------UGGG---------------CG-------------CCGUAGCCG- -5'
26386 5' -61 NC_005345.2 + 37986 0.66 0.409467
Target:  5'- gACGCGGCGAgUGCCgaGCuuGGCAUCacguGGUc -3'
miRNA:   3'- -UGCGCCGCUaGUGGg-CG--CCGUAG----CCG- -5'
26386 5' -61 NC_005345.2 + 47589 0.66 0.409467
Target:  5'- -gGCGGCGA-CugCCGCcucacGGUgcccgGUUGGCu -3'
miRNA:   3'- ugCGCCGCUaGugGGCG-----CCG-----UAGCCG- -5'
26386 5' -61 NC_005345.2 + 40176 0.66 0.409467
Target:  5'- gGCGCGcagcuGCgGAUCgagGCCgGCGuGCAgcUCGGCa -3'
miRNA:   3'- -UGCGC-----CG-CUAG---UGGgCGC-CGU--AGCCG- -5'
26386 5' -61 NC_005345.2 + 20202 0.66 0.409467
Target:  5'- uCGCGGauAagGCCCGUcagcuGCGUCGGCu -3'
miRNA:   3'- uGCGCCgcUagUGGGCGc----CGUAGCCG- -5'
26386 5' -61 NC_005345.2 + 18961 0.66 0.409467
Target:  5'- -gGCGGCGAggaacgagCGCCaCGCGucgaugcccgaGCcUCGGCc -3'
miRNA:   3'- ugCGCCGCUa-------GUGG-GCGC-----------CGuAGCCG- -5'
26386 5' -61 NC_005345.2 + 47946 0.66 0.40857
Target:  5'- aGCGUGGCGAgaUCACCCugucccaGUGGUGgaaacugUGGUg -3'
miRNA:   3'- -UGCGCCGCU--AGUGGG-------CGCCGUa------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.