miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26387 3' -55.3 NC_005345.2 + 20038 0.66 0.721965
Target:  5'- cCUCGCGG-CgGCCGAUcuuGGACU-CGg -3'
miRNA:   3'- cGAGCGCCaGgCGGCUGu--CUUGAaGU- -5'
26387 3' -55.3 NC_005345.2 + 22997 0.66 0.721965
Target:  5'- gGCUCGgGGUCCucGCCGAgGucGGGCaUCc -3'
miRNA:   3'- -CGAGCgCCAGG--CGGCUgU--CUUGaAGu -5'
26387 3' -55.3 NC_005345.2 + 18231 0.66 0.721965
Target:  5'- ---aGCGGgCCGCCGGCGGucg-UCAc -3'
miRNA:   3'- cgagCGCCaGGCGGCUGUCuugaAGU- -5'
26387 3' -55.3 NC_005345.2 + 41351 0.66 0.711246
Target:  5'- cGCUUGCGGUaCgGCaGGCAGuGCUgaUCGa -3'
miRNA:   3'- -CGAGCGCCA-GgCGgCUGUCuUGA--AGU- -5'
26387 3' -55.3 NC_005345.2 + 39428 0.66 0.711246
Target:  5'- cGgUCGCGGcCCGCgCGGCGcGGCU-CAc -3'
miRNA:   3'- -CgAGCGCCaGGCG-GCUGUcUUGAaGU- -5'
26387 3' -55.3 NC_005345.2 + 1569 0.66 0.70045
Target:  5'- ---gGCGGcagucgCCGCCGugGGGGCcgUCAc -3'
miRNA:   3'- cgagCGCCa-----GGCGGCugUCUUGa-AGU- -5'
26387 3' -55.3 NC_005345.2 + 6116 0.66 0.686317
Target:  5'- cGCguaggUGCGG-CCGCCGACgacgcaguacgggaAGAacagcGCUUCGa -3'
miRNA:   3'- -CGa----GCGCCaGGCGGCUG--------------UCU-----UGAAGU- -5'
26387 3' -55.3 NC_005345.2 + 48621 0.66 0.678668
Target:  5'- aGCUCGUGuUCCGCgGcccACAGGGCggCGu -3'
miRNA:   3'- -CGAGCGCcAGGCGgC---UGUCUUGaaGU- -5'
26387 3' -55.3 NC_005345.2 + 28347 0.66 0.667705
Target:  5'- cGCgacaCGCGccGUCggCGCCGACAGGGCggCGg -3'
miRNA:   3'- -CGa---GCGC--CAG--GCGGCUGUCUUGaaGU- -5'
26387 3' -55.3 NC_005345.2 + 17663 0.67 0.656709
Target:  5'- uGUUCGCGGggCCGCCGAUcc-GCU-CGa -3'
miRNA:   3'- -CGAGCGCCa-GGCGGCUGucuUGAaGU- -5'
26387 3' -55.3 NC_005345.2 + 23187 0.67 0.656709
Target:  5'- cGCUCG-GGUUCGaCCGGCugcGGGACUg-- -3'
miRNA:   3'- -CGAGCgCCAGGC-GGCUG---UCUUGAagu -5'
26387 3' -55.3 NC_005345.2 + 20612 0.67 0.656709
Target:  5'- cGCUCGCaaGUCuCGgCGACGGGGCgaUCGa -3'
miRNA:   3'- -CGAGCGc-CAG-GCgGCUGUCUUGa-AGU- -5'
26387 3' -55.3 NC_005345.2 + 17548 0.67 0.655608
Target:  5'- uGCgaucCGCGGgCCGCgccgagcagggccCGGCAGAGCUgcaUCAg -3'
miRNA:   3'- -CGa---GCGCCaGGCG-------------GCUGUCUUGA---AGU- -5'
26387 3' -55.3 NC_005345.2 + 18972 0.67 0.634658
Target:  5'- cGCUCGCcgcaugGGUCgccgcugGCCGGCGGGACgaccUCGa -3'
miRNA:   3'- -CGAGCG------CCAGg------CGGCUGUCUUGa---AGU- -5'
26387 3' -55.3 NC_005345.2 + 17872 0.67 0.623623
Target:  5'- cCUCGgGGUCCGCCGugGcguagUCGc -3'
miRNA:   3'- cGAGCgCCAGGCGGCugUcuugaAGU- -5'
26387 3' -55.3 NC_005345.2 + 9417 0.67 0.612597
Target:  5'- gGCagCGgGGUCuCGCCGACGGAcACa--- -3'
miRNA:   3'- -CGa-GCgCCAG-GCGGCUGUCU-UGaagu -5'
26387 3' -55.3 NC_005345.2 + 16878 0.67 0.601587
Target:  5'- cGCgCGCgGGUCCGCCuuCGGAACcUUg -3'
miRNA:   3'- -CGaGCG-CCAGGCGGcuGUCUUGaAGu -5'
26387 3' -55.3 NC_005345.2 + 35263 0.68 0.568751
Target:  5'- aGUUCGgugaUGGUCCggaGCCGGCGGAGCg--- -3'
miRNA:   3'- -CGAGC----GCCAGG---CGGCUGUCUUGaagu -5'
26387 3' -55.3 NC_005345.2 + 32807 0.69 0.53638
Target:  5'- gGC-CGCGaugCCGCCGAC-GAGCUUUc -3'
miRNA:   3'- -CGaGCGCca-GGCGGCUGuCUUGAAGu -5'
26387 3' -55.3 NC_005345.2 + 4284 0.69 0.525728
Target:  5'- cGCgaCGCGG-CCGCCG-CGGGGCgccUCGg -3'
miRNA:   3'- -CGa-GCGCCaGGCGGCuGUCUUGa--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.