miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26387 5' -58.2 NC_005345.2 + 40763 0.66 0.582522
Target:  5'- aGCGGCucgUCgGGCCG-GUcGGCCGGc -3'
miRNA:   3'- cUGCUGua-AGgCCGGCgCA-CUGGCCc -5'
26387 5' -58.2 NC_005345.2 + 5939 0.66 0.582522
Target:  5'- -cUGugGgUgUGGCUGCG-GACCGGGc -3'
miRNA:   3'- cuGCugUaAgGCCGGCGCaCUGGCCC- -5'
26387 5' -58.2 NC_005345.2 + 48375 0.66 0.582522
Target:  5'- -uCGGCAUccCCcGCCGCc-GGCCGGGg -3'
miRNA:   3'- cuGCUGUAa-GGcCGGCGcaCUGGCCC- -5'
26387 5' -58.2 NC_005345.2 + 14496 0.66 0.571913
Target:  5'- -cCGACugguaCGGCCGa--GACCGGGa -3'
miRNA:   3'- cuGCUGuaag-GCCGGCgcaCUGGCCC- -5'
26387 5' -58.2 NC_005345.2 + 37492 0.66 0.56135
Target:  5'- uACGACGUUcccgCCGGgCGCG-GGCUGcGGc -3'
miRNA:   3'- cUGCUGUAA----GGCCgGCGCaCUGGC-CC- -5'
26387 5' -58.2 NC_005345.2 + 45524 0.66 0.56135
Target:  5'- gGACGGCAcaCCuGCgGCGcgGGCCGuGGg -3'
miRNA:   3'- -CUGCUGUaaGGcCGgCGCa-CUGGC-CC- -5'
26387 5' -58.2 NC_005345.2 + 9069 0.66 0.56135
Target:  5'- cGCGACuuuaUCCgGGCCGCcGUcGCCGGc -3'
miRNA:   3'- cUGCUGua--AGG-CCGGCG-CAcUGGCCc -5'
26387 5' -58.2 NC_005345.2 + 23554 0.66 0.550841
Target:  5'- uGGCGAgGUgaccugUCGGCCGCGUccgagcugcGGCUGcGGg -3'
miRNA:   3'- -CUGCUgUAa-----GGCCGGCGCA---------CUGGC-CC- -5'
26387 5' -58.2 NC_005345.2 + 31626 0.66 0.540393
Target:  5'- uGGCGACAcgguccucgcCCGGCCG-GcGACCGGcGg -3'
miRNA:   3'- -CUGCUGUaa--------GGCCGGCgCaCUGGCC-C- -5'
26387 5' -58.2 NC_005345.2 + 8212 0.66 0.540393
Target:  5'- cACGAgA--UCGGCCGUGcUGuCCGGGu -3'
miRNA:   3'- cUGCUgUaaGGCCGGCGC-ACuGGCCC- -5'
26387 5' -58.2 NC_005345.2 + 1191 0.66 0.540393
Target:  5'- gGGCGGCucggcagUCCGGcCCGCG-GGCCa-- -3'
miRNA:   3'- -CUGCUGua-----AGGCC-GGCGCaCUGGccc -5'
26387 5' -58.2 NC_005345.2 + 8736 0.67 0.528979
Target:  5'- cGGCGGCGaUCCguacggacgcgucGGCgGUGUGGCUGGc -3'
miRNA:   3'- -CUGCUGUaAGG-------------CCGgCGCACUGGCCc -5'
26387 5' -58.2 NC_005345.2 + 47873 0.67 0.519707
Target:  5'- cGGCGACGgugacgUCGGCCGgCGUG-CUGuGGu -3'
miRNA:   3'- -CUGCUGUaa----GGCCGGC-GCACuGGC-CC- -5'
26387 5' -58.2 NC_005345.2 + 30892 0.67 0.519707
Target:  5'- gGGCGACGgcgCGGCCGgCGagcaGcACCGGGa -3'
miRNA:   3'- -CUGCUGUaagGCCGGC-GCa---C-UGGCCC- -5'
26387 5' -58.2 NC_005345.2 + 11200 0.67 0.519707
Target:  5'- -uCGACg--CCGGCC-UGUGGCaCGGGc -3'
miRNA:   3'- cuGCUGuaaGGCCGGcGCACUG-GCCC- -5'
26387 5' -58.2 NC_005345.2 + 4920 0.67 0.515606
Target:  5'- uGCGGCAgccgcacgugcgcUCCGGCCGgGUGGCggucaCGGa -3'
miRNA:   3'- cUGCUGUa------------AGGCCGGCgCACUG-----GCCc -5'
26387 5' -58.2 NC_005345.2 + 17955 0.67 0.50948
Target:  5'- -cCGGCGUccgCuCGGCCGCcUG-CCGGGc -3'
miRNA:   3'- cuGCUGUAa--G-GCCGGCGcACuGGCCC- -5'
26387 5' -58.2 NC_005345.2 + 16912 0.67 0.50948
Target:  5'- cGCGugGUgaccCCGGUCGCGgucACCGcGGa -3'
miRNA:   3'- cUGCugUAa---GGCCGGCGCac-UGGC-CC- -5'
26387 5' -58.2 NC_005345.2 + 5289 0.67 0.499339
Target:  5'- cGCGGaGUcCCGGCCGacgcccCGUcGACCGGGc -3'
miRNA:   3'- cUGCUgUAaGGCCGGC------GCA-CUGGCCC- -5'
26387 5' -58.2 NC_005345.2 + 36899 0.67 0.499339
Target:  5'- cGCGACGaagCgGGaCCGgGUGAgCGGGu -3'
miRNA:   3'- cUGCUGUaa-GgCC-GGCgCACUgGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.