miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 9985 0.66 0.806334
Target:  5'- gGCGUCGucauggugcgACacgGCGCCGGUgaGCGggagCGACu -3'
miRNA:   3'- -UGUAGU----------UGga-CGUGGCCA--UGCa---GCUG- -5'
26388 3' -53.2 NC_005345.2 + 16355 0.66 0.806334
Target:  5'- gGCAUCGcgGCCgGCGCCgcGGUGauCG-CGACg -3'
miRNA:   3'- -UGUAGU--UGGaCGUGG--CCAU--GCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 21891 0.66 0.802424
Target:  5'- gACAgCAGCCgguuccgccccucGCuCCGG-GCGUCGACg -3'
miRNA:   3'- -UGUaGUUGGa------------CGuGGCCaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15667 0.66 0.796504
Target:  5'- cGCGcCGACCUGCACCGu--CGgcCGGCc -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcauGCa-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 24568 0.66 0.796504
Target:  5'- uCGUCGccgGCCUGCGguaCGcGUACGgCGACa -3'
miRNA:   3'- uGUAGU---UGGACGUg--GC-CAUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 18919 0.66 0.796504
Target:  5'- uCGUCGACCgGCucaccGCCGGaUGCG-CGAUc -3'
miRNA:   3'- uGUAGUUGGaCG-----UGGCC-AUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 13795 0.66 0.796504
Target:  5'- gACggCGGCCccgacaCGCCccugaGGUACGUCGACa -3'
miRNA:   3'- -UGuaGUUGGac----GUGG-----CCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 26824 0.66 0.796504
Target:  5'- cGCAUCAcugcuGCCgGCACCcGGcGCGcCGAg -3'
miRNA:   3'- -UGUAGU-----UGGaCGUGG-CCaUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 42781 0.66 0.776315
Target:  5'- aAC-UCGGCCgacUGUAgCCGGUGCGgaugCGGCc -3'
miRNA:   3'- -UGuAGUUGG---ACGU-GGCCAUGCa---GCUG- -5'
26388 3' -53.2 NC_005345.2 + 25532 0.66 0.765981
Target:  5'- uGCG-CAGCCgUGC-CCGGUcCGcCGGCg -3'
miRNA:   3'- -UGUaGUUGG-ACGuGGCCAuGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 22672 0.66 0.765981
Target:  5'- -gGUCAGUCgcGUACaGGUACGUCGGCg -3'
miRNA:   3'- ugUAGUUGGa-CGUGgCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 39900 0.66 0.765981
Target:  5'- -uGUCGGCC-GCACCGuGgucgcgGCGUaCGACu -3'
miRNA:   3'- ugUAGUUGGaCGUGGC-Ca-----UGCA-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 22386 0.66 0.765981
Target:  5'- cGCcgC-ACCcGCGCCGGggacuCGUCGAg -3'
miRNA:   3'- -UGuaGuUGGaCGUGGCCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 39394 0.67 0.755502
Target:  5'- gGCGgcgCAaucGCCgUGC-CCGGgaGCGUCGGCg -3'
miRNA:   3'- -UGUa--GU---UGG-ACGuGGCCa-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 12840 0.67 0.755502
Target:  5'- cGCAUCAccgGCgaGgACCGGUgACGUCGu- -3'
miRNA:   3'- -UGUAGU---UGgaCgUGGCCA-UGCAGCug -5'
26388 3' -53.2 NC_005345.2 + 22278 0.67 0.755502
Target:  5'- cCAUCGACC-GCACCGccGCuGUCGGg -3'
miRNA:   3'- uGUAGUUGGaCGUGGCcaUG-CAGCUg -5'
26388 3' -53.2 NC_005345.2 + 27113 0.67 0.744891
Target:  5'- gACAugcUCGgcGCCacggcgGCACCGGccgGCGUCGAg -3'
miRNA:   3'- -UGU---AGU--UGGa-----CGUGGCCa--UGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 32102 0.67 0.744891
Target:  5'- --uUCGACCUcgggcucgggcaGCGCgGGUGCGagGGCg -3'
miRNA:   3'- uguAGUUGGA------------CGUGgCCAUGCagCUG- -5'
26388 3' -53.2 NC_005345.2 + 22541 0.67 0.734161
Target:  5'- cACAcCGGCCUGCGCCGcaGCGagcgCGAg -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcaUGCa---GCUg -5'
26388 3' -53.2 NC_005345.2 + 18772 0.67 0.734161
Target:  5'- cGCcUCGACCUGCGCCcgccgcGGgcugcCGUCGGg -3'
miRNA:   3'- -UGuAGUUGGACGUGG------CCau---GCAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.