miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 39337 0.7 0.578071
Target:  5'- gGCAUCGGCg-GCACCGGc-CG-CGACa -3'
miRNA:   3'- -UGUAGUUGgaCGUGGCCauGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 37319 0.69 0.589243
Target:  5'- gGCGUCGACCUcGCccacgguCCGGU-UGUCGAa -3'
miRNA:   3'- -UGUAGUUGGA-CGu------GGCCAuGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 32993 0.69 0.589243
Target:  5'- cGCAggCGGCCgggGUGgCGGggGCGUCGACg -3'
miRNA:   3'- -UGUa-GUUGGa--CGUgGCCa-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15310 0.69 0.600453
Target:  5'- uCGUCGcccGgCUGUAggUCGGUGCGUCGGCc -3'
miRNA:   3'- uGUAGU---UgGACGU--GGCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 34720 0.69 0.600453
Target:  5'- aGCAgagcgCGACCUcgaucGC-CCGGcagGCGUCGGCg -3'
miRNA:   3'- -UGUa----GUUGGA-----CGuGGCCa--UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 34361 0.69 0.611691
Target:  5'- gACGUCGAagcGCACCGGggcguUGCaGUCGACg -3'
miRNA:   3'- -UGUAGUUggaCGUGGCC-----AUG-CAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 44265 0.69 0.611691
Target:  5'- aGCAUCGACUcgcagcgGCGCCGGUagucccccucgAUGUCGuCg -3'
miRNA:   3'- -UGUAGUUGGa------CGUGGCCA-----------UGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 41810 0.69 0.634213
Target:  5'- gACGUCGAgaccCUUGCGCaCGGcauUGUCGACg -3'
miRNA:   3'- -UGUAGUU----GGACGUG-GCCau-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 37965 0.69 0.634213
Target:  5'- gGCGUCGACCagGCugCGGaccUGCGcCGGg -3'
miRNA:   3'- -UGUAGUUGGa-CGugGCC---AUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 4206 0.69 0.634213
Target:  5'- gGCGgcgCGGCagaUGCugCGGUACGcCGAg -3'
miRNA:   3'- -UGUa--GUUGg--ACGugGCCAUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 3141 0.68 0.656727
Target:  5'- uGCA-CAGCC-GUGCCGacgGCGUCGGCg -3'
miRNA:   3'- -UGUaGUUGGaCGUGGCca-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 33308 0.68 0.656727
Target:  5'- -gAUCAgaACCUGCGCgguguagcuCGGgcCGUCGGCc -3'
miRNA:   3'- ugUAGU--UGGACGUG---------GCCauGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 40751 0.68 0.667953
Target:  5'- cCGUCGACCgGCAgCGGcuCGUCGGg -3'
miRNA:   3'- uGUAGUUGGaCGUgGCCauGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 24080 0.68 0.690289
Target:  5'- -gAUCGGCCggccgugGCACuCGGUGCGUaCGcCg -3'
miRNA:   3'- ugUAGUUGGa------CGUG-GCCAUGCA-GCuG- -5'
26388 3' -53.2 NC_005345.2 + 6359 0.68 0.690289
Target:  5'- gGCcgCAuCC-GCACCGGcUACaGUCGGCc -3'
miRNA:   3'- -UGuaGUuGGaCGUGGCC-AUG-CAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 14645 0.68 0.701375
Target:  5'- cGCcUCGACCgcguccucgGCACCGGccgggcgGCGUCGcCg -3'
miRNA:   3'- -UGuAGUUGGa--------CGUGGCCa------UGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 35860 0.68 0.70248
Target:  5'- cACAUCAACC-GCACCGGcgagcugccggugcaGCGguucgcCGACg -3'
miRNA:   3'- -UGUAGUUGGaCGUGGCCa--------------UGCa-----GCUG- -5'
26388 3' -53.2 NC_005345.2 + 33476 0.67 0.712391
Target:  5'- -gAUCGGCCgGCcgaCGGUGCagGUCGGCg -3'
miRNA:   3'- ugUAGUUGGaCGug-GCCAUG--CAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15599 0.67 0.712391
Target:  5'- --uUCAgGCCUGCGCCGa-GCGUCGuCa -3'
miRNA:   3'- uguAGU-UGGACGUGGCcaUGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 245 0.67 0.723323
Target:  5'- gGCAgaGACCccCGCCGuGUAUGUCGGCg -3'
miRNA:   3'- -UGUagUUGGacGUGGC-CAUGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.