Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26388 | 3' | -53.2 | NC_005345.2 | + | 34361 | 0.69 | 0.611691 |
Target: 5'- gACGUCGAagcGCACCGGggcguUGCaGUCGACg -3' miRNA: 3'- -UGUAGUUggaCGUGGCC-----AUG-CAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 34720 | 0.69 | 0.600453 |
Target: 5'- aGCAgagcgCGACCUcgaucGC-CCGGcagGCGUCGGCg -3' miRNA: 3'- -UGUa----GUUGGA-----CGuGGCCa--UGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 34827 | 0.7 | 0.555876 |
Target: 5'- cCAUCGGCCUGaucauCACCGGgauCG-CGGCg -3' miRNA: 3'- uGUAGUUGGAC-----GUGGCCau-GCaGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 35711 | 0.72 | 0.439832 |
Target: 5'- gACGUC-GCCgGUACCGGacacuccggagACGUCGACg -3' miRNA: 3'- -UGUAGuUGGaCGUGGCCa----------UGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 35860 | 0.68 | 0.70248 |
Target: 5'- cACAUCAACC-GCACCGGcgagcugccggugcaGCGguucgcCGACg -3' miRNA: 3'- -UGUAGUUGGaCGUGGCCa--------------UGCa-----GCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 37319 | 0.69 | 0.589243 |
Target: 5'- gGCGUCGACCUcGCccacgguCCGGU-UGUCGAa -3' miRNA: 3'- -UGUAGUUGGA-CGu------GGCCAuGCAGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 37965 | 0.69 | 0.634213 |
Target: 5'- gGCGUCGACCagGCugCGGaccUGCGcCGGg -3' miRNA: 3'- -UGUAGUUGGa-CGugGCC---AUGCaGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 39337 | 0.7 | 0.578071 |
Target: 5'- gGCAUCGGCg-GCACCGGc-CG-CGACa -3' miRNA: 3'- -UGUAGUUGgaCGUGGCCauGCaGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 39394 | 0.67 | 0.755502 |
Target: 5'- gGCGgcgCAaucGCCgUGC-CCGGgaGCGUCGGCg -3' miRNA: 3'- -UGUa--GU---UGG-ACGuGGCCa-UGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 39469 | 0.7 | 0.566946 |
Target: 5'- -gAUCGGCCUGCAgCCGGcgGCGcUCG-Cg -3' miRNA: 3'- ugUAGUUGGACGU-GGCCa-UGC-AGCuG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 39900 | 0.66 | 0.765981 |
Target: 5'- -uGUCGGCC-GCACCGuGgucgcgGCGUaCGACu -3' miRNA: 3'- ugUAGUUGGaCGUGGC-Ca-----UGCA-GCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 40751 | 0.68 | 0.667953 |
Target: 5'- cCGUCGACCgGCAgCGGcuCGUCGGg -3' miRNA: 3'- uGUAGUUGGaCGUgGCCauGCAGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 41810 | 0.69 | 0.634213 |
Target: 5'- gACGUCGAgaccCUUGCGCaCGGcauUGUCGACg -3' miRNA: 3'- -UGUAGUU----GGACGUG-GCCau-GCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 42781 | 0.66 | 0.776315 |
Target: 5'- aAC-UCGGCCgacUGUAgCCGGUGCGgaugCGGCc -3' miRNA: 3'- -UGuAGUUGG---ACGU-GGCCAUGCa---GCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 43330 | 0.67 | 0.734161 |
Target: 5'- aGCGggCGAgCUGCugCGcGUACGgcUCGACc -3' miRNA: 3'- -UGUa-GUUgGACGugGC-CAUGC--AGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 44265 | 0.69 | 0.611691 |
Target: 5'- aGCAUCGACUcgcagcgGCGCCGGUagucccccucgAUGUCGuCg -3' miRNA: 3'- -UGUAGUUGGa------CGUGGCCA-----------UGCAGCuG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 44650 | 0.75 | 0.314396 |
Target: 5'- --cUCGACCUGCugCGGUGggcacggcuCGUCGAg -3' miRNA: 3'- uguAGUUGGACGugGCCAU---------GCAGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 45655 | 0.7 | 0.544869 |
Target: 5'- gACAUCcccacgAGCCUcGCGCgGGUaACGUCGAg -3' miRNA: 3'- -UGUAG------UUGGA-CGUGgCCA-UGCAGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 46574 | 0.71 | 0.501632 |
Target: 5'- cCGUCAGCCUcgGCcCCGaGcACGUCGACc -3' miRNA: 3'- uGUAGUUGGA--CGuGGC-CaUGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 47686 | 0.77 | 0.217958 |
Target: 5'- cGCAUCAcgGCCgacgGCAuCCGGUACGaCGACc -3' miRNA: 3'- -UGUAGU--UGGa---CGU-GGCCAUGCaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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