Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26388 | 3' | -53.2 | NC_005345.2 | + | 34720 | 0.69 | 0.600453 |
Target: 5'- aGCAgagcgCGACCUcgaucGC-CCGGcagGCGUCGGCg -3' miRNA: 3'- -UGUa----GUUGGA-----CGuGGCCa--UGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 34361 | 0.69 | 0.611691 |
Target: 5'- gACGUCGAagcGCACCGGggcguUGCaGUCGACg -3' miRNA: 3'- -UGUAGUUggaCGUGGCC-----AUG-CAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 33476 | 0.67 | 0.712391 |
Target: 5'- -gAUCGGCCgGCcgaCGGUGCagGUCGGCg -3' miRNA: 3'- ugUAGUUGGaCGug-GCCAUG--CAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 33308 | 0.68 | 0.656727 |
Target: 5'- -gAUCAgaACCUGCGCgguguagcuCGGgcCGUCGGCc -3' miRNA: 3'- ugUAGU--UGGACGUG---------GCCauGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 32993 | 0.69 | 0.589243 |
Target: 5'- cGCAggCGGCCgggGUGgCGGggGCGUCGACg -3' miRNA: 3'- -UGUa-GUUGGa--CGUgGCCa-UGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 32102 | 0.67 | 0.744891 |
Target: 5'- --uUCGACCUcgggcucgggcaGCGCgGGUGCGagGGCg -3' miRNA: 3'- uguAGUUGGA------------CGUGgCCAUGCagCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 28224 | 1.1 | 0.001121 |
Target: 5'- gACAUCAACCUGCACCGGUACGUCGACg -3' miRNA: 3'- -UGUAGUUGGACGUGGCCAUGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 27113 | 0.67 | 0.744891 |
Target: 5'- gACAugcUCGgcGCCacggcgGCACCGGccgGCGUCGAg -3' miRNA: 3'- -UGU---AGU--UGGa-----CGUGGCCa--UGCAGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 26824 | 0.66 | 0.796504 |
Target: 5'- cGCAUCAcugcuGCCgGCACCcGGcGCGcCGAg -3' miRNA: 3'- -UGUAGU-----UGGaCGUGG-CCaUGCaGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 25532 | 0.66 | 0.765981 |
Target: 5'- uGCG-CAGCCgUGC-CCGGUcCGcCGGCg -3' miRNA: 3'- -UGUaGUUGG-ACGuGGCCAuGCaGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 24568 | 0.66 | 0.796504 |
Target: 5'- uCGUCGccgGCCUGCGguaCGcGUACGgCGACa -3' miRNA: 3'- uGUAGU---UGGACGUg--GC-CAUGCaGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 24080 | 0.68 | 0.690289 |
Target: 5'- -gAUCGGCCggccgugGCACuCGGUGCGUaCGcCg -3' miRNA: 3'- ugUAGUUGGa------CGUG-GCCAUGCA-GCuG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 22672 | 0.66 | 0.765981 |
Target: 5'- -gGUCAGUCgcGUACaGGUACGUCGGCg -3' miRNA: 3'- ugUAGUUGGa-CGUGgCCAUGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 22541 | 0.67 | 0.734161 |
Target: 5'- cACAcCGGCCUGCGCCGcaGCGagcgCGAg -3' miRNA: 3'- -UGUaGUUGGACGUGGCcaUGCa---GCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 22386 | 0.66 | 0.765981 |
Target: 5'- cGCcgC-ACCcGCGCCGGggacuCGUCGAg -3' miRNA: 3'- -UGuaGuUGGaCGUGGCCau---GCAGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 22278 | 0.67 | 0.755502 |
Target: 5'- cCAUCGACC-GCACCGccGCuGUCGGg -3' miRNA: 3'- uGUAGUUGGaCGUGGCcaUG-CAGCUg -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 22227 | 0.7 | 0.566946 |
Target: 5'- gACcUCGACCaUGCGCUcg-ACGUCGACg -3' miRNA: 3'- -UGuAGUUGG-ACGUGGccaUGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 21891 | 0.66 | 0.802424 |
Target: 5'- gACAgCAGCCgguuccgccccucGCuCCGG-GCGUCGACg -3' miRNA: 3'- -UGUaGUUGGa------------CGuGGCCaUGCAGCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 21367 | 0.8 | 0.139819 |
Target: 5'- cACAUCAcgGCCUGCagGCCGGUGCGcgggUGACg -3' miRNA: 3'- -UGUAGU--UGGACG--UGGCCAUGCa---GCUG- -5' |
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26388 | 3' | -53.2 | NC_005345.2 | + | 20903 | 0.71 | 0.470215 |
Target: 5'- uCGUCGACCU-CGCCGucguCGUCGACg -3' miRNA: 3'- uGUAGUUGGAcGUGGCcau-GCAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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