miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 18919 0.66 0.796504
Target:  5'- uCGUCGACCgGCucaccGCCGGaUGCG-CGAUc -3'
miRNA:   3'- uGUAGUUGGaCG-----UGGCC-AUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 18772 0.67 0.734161
Target:  5'- cGCcUCGACCUGCGCCcgccgcGGgcugcCGUCGGg -3'
miRNA:   3'- -UGuAGUUGGACGUGG------CCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 16355 0.66 0.806334
Target:  5'- gGCAUCGcgGCCgGCGCCgcGGUGauCG-CGACg -3'
miRNA:   3'- -UGUAGU--UGGaCGUGG--CCAU--GCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15667 0.66 0.796504
Target:  5'- cGCGcCGACCUGCACCGu--CGgcCGGCc -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcauGCa-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 15599 0.67 0.712391
Target:  5'- --uUCAgGCCUGCGCCGa-GCGUCGuCa -3'
miRNA:   3'- uguAGU-UGGACGUGGCcaUGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 15310 0.69 0.600453
Target:  5'- uCGUCGcccGgCUGUAggUCGGUGCGUCGGCc -3'
miRNA:   3'- uGUAGU---UgGACGU--GGCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 14778 0.72 0.449837
Target:  5'- uCGUCGACUgcaacGCcCCGGUGCGcuUCGACg -3'
miRNA:   3'- uGUAGUUGGa----CGuGGCCAUGC--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 14645 0.68 0.701375
Target:  5'- cGCcUCGACCgcguccucgGCACCGGccgggcgGCGUCGcCg -3'
miRNA:   3'- -UGuAGUUGGa--------CGUGGCCa------UGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 13795 0.66 0.796504
Target:  5'- gACggCGGCCccgacaCGCCccugaGGUACGUCGACa -3'
miRNA:   3'- -UGuaGUUGGac----GUGG-----CCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 13409 0.7 0.533935
Target:  5'- --uUCGuCCUGCGCCGcacCGUCGACg -3'
miRNA:   3'- uguAGUuGGACGUGGCcauGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 12840 0.67 0.755502
Target:  5'- cGCAUCAccgGCgaGgACCGGUgACGUCGu- -3'
miRNA:   3'- -UGUAGU---UGgaCgUGGCCA-UGCAGCug -5'
26388 3' -53.2 NC_005345.2 + 11863 0.67 0.723323
Target:  5'- gGCAUCGGcCCUGCACgacGUGCcccUCGACg -3'
miRNA:   3'- -UGUAGUU-GGACGUGgc-CAUGc--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 10901 0.77 0.242616
Target:  5'- cACGUCAucgaucacGCCUGCACCGGUccgcGCGUCc-- -3'
miRNA:   3'- -UGUAGU--------UGGACGUGGCCA----UGCAGcug -5'
26388 3' -53.2 NC_005345.2 + 9985 0.66 0.806334
Target:  5'- gGCGUCGucauggugcgACacgGCGCCGGUgaGCGggagCGACu -3'
miRNA:   3'- -UGUAGU----------UGga-CGUGGCCA--UGCa---GCUG- -5'
26388 3' -53.2 NC_005345.2 + 9241 0.7 0.555876
Target:  5'- -aGUCGuacGCCUGCGaccaCGGUGCGgcCGACa -3'
miRNA:   3'- ugUAGU---UGGACGUg---GCCAUGCa-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 7218 0.74 0.347305
Target:  5'- -uGUCGACacgGCgACCGGUGuCGUCGGCg -3'
miRNA:   3'- ugUAGUUGga-CG-UGGCCAU-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 6359 0.68 0.690289
Target:  5'- gGCcgCAuCC-GCACCGGcUACaGUCGGCc -3'
miRNA:   3'- -UGuaGUuGGaCGUGGCC-AUG-CAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 5858 0.72 0.449837
Target:  5'- cGCGUCGACCU-CGCCGaGgACGUCGuCg -3'
miRNA:   3'- -UGUAGUUGGAcGUGGC-CaUGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 4206 0.69 0.634213
Target:  5'- gGCGgcgCGGCagaUGCugCGGUACGcCGAg -3'
miRNA:   3'- -UGUa--GUUGg--ACGugGCCAUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 3141 0.68 0.656727
Target:  5'- uGCA-CAGCC-GUGCCGacgGCGUCGGCg -3'
miRNA:   3'- -UGUaGUUGGaCGUGGCca-UGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.