miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 28224 1.1 0.001121
Target:  5'- gACAUCAACCUGCACCGGUACGUCGACg -3'
miRNA:   3'- -UGUAGUUGGACGUGGCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 41810 0.69 0.634213
Target:  5'- gACGUCGAgaccCUUGCGCaCGGcauUGUCGACg -3'
miRNA:   3'- -UGUAGUU----GGACGUG-GCCau-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 6359 0.68 0.690289
Target:  5'- gGCcgCAuCC-GCACCGGcUACaGUCGGCc -3'
miRNA:   3'- -UGuaGUuGGaCGUGGCC-AUG-CAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 16355 0.66 0.806334
Target:  5'- gGCAUCGcgGCCgGCGCCgcGGUGauCG-CGACg -3'
miRNA:   3'- -UGUAGU--UGGaCGUGG--CCAU--GCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 7218 0.74 0.347305
Target:  5'- -uGUCGACacgGCgACCGGUGuCGUCGGCg -3'
miRNA:   3'- ugUAGUUGga-CG-UGGCCAU-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 14778 0.72 0.449837
Target:  5'- uCGUCGACUgcaacGCcCCGGUGCGcuUCGACg -3'
miRNA:   3'- uGUAGUUGGa----CGuGGCCAUGC--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 46574 0.71 0.501632
Target:  5'- cCGUCAGCCUcgGCcCCGaGcACGUCGACc -3'
miRNA:   3'- uGUAGUUGGA--CGuGGC-CaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 1344 0.71 0.523079
Target:  5'- -gGUCGcgguaacgcGCCUGCcacgaGCCGGUgcagucGCGUCGGCg -3'
miRNA:   3'- ugUAGU---------UGGACG-----UGGCCA------UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 45655 0.7 0.544869
Target:  5'- gACAUCcccacgAGCCUcGCGCgGGUaACGUCGAg -3'
miRNA:   3'- -UGUAG------UUGGA-CGUGgCCA-UGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 4206 0.69 0.634213
Target:  5'- gGCGgcgCGGCagaUGCugCGGUACGcCGAg -3'
miRNA:   3'- -UGUa--GUUGg--ACGugGCCAUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 34827 0.7 0.555876
Target:  5'- cCAUCGGCCUGaucauCACCGGgauCG-CGGCg -3'
miRNA:   3'- uGUAGUUGGAC-----GUGGCCau-GCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 47863 0.7 0.533935
Target:  5'- gGCAUgGGCCcgGCGaCGGUgACGUCGGCc -3'
miRNA:   3'- -UGUAgUUGGa-CGUgGCCA-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 47686 0.77 0.217958
Target:  5'- cGCAUCAcgGCCgacgGCAuCCGGUACGaCGACc -3'
miRNA:   3'- -UGUAGU--UGGa---CGU-GGCCAUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 22227 0.7 0.566946
Target:  5'- gACcUCGACCaUGCGCUcg-ACGUCGACg -3'
miRNA:   3'- -UGuAGUUGG-ACGUGGccaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 10901 0.77 0.242616
Target:  5'- cACGUCAucgaucacGCCUGCACCGGUccgcGCGUCc-- -3'
miRNA:   3'- -UGUAGU--------UGGACGUGGCCA----UGCAGcug -5'
26388 3' -53.2 NC_005345.2 + 13409 0.7 0.533935
Target:  5'- --uUCGuCCUGCGCCGcacCGUCGACg -3'
miRNA:   3'- uguAGUuGGACGUGGCcauGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15310 0.69 0.600453
Target:  5'- uCGUCGcccGgCUGUAggUCGGUGCGUCGGCc -3'
miRNA:   3'- uGUAGU---UgGACGU--GGCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 24080 0.68 0.690289
Target:  5'- -gAUCGGCCggccgugGCACuCGGUGCGUaCGcCg -3'
miRNA:   3'- ugUAGUUGGa------CGUG-GCCAUGCA-GCuG- -5'
26388 3' -53.2 NC_005345.2 + 44650 0.75 0.314396
Target:  5'- --cUCGACCUGCugCGGUGggcacggcuCGUCGAg -3'
miRNA:   3'- uguAGUUGGACGugGCCAU---------GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 5858 0.72 0.449837
Target:  5'- cGCGUCGACCU-CGCCGaGgACGUCGuCg -3'
miRNA:   3'- -UGUAGUUGGAcGUGGC-CaUGCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.