miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 34827 0.7 0.555876
Target:  5'- cCAUCGGCCUGaucauCACCGGgauCG-CGGCg -3'
miRNA:   3'- uGUAGUUGGAC-----GUGGCCau-GCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 24568 0.66 0.796504
Target:  5'- uCGUCGccgGCCUGCGguaCGcGUACGgCGACa -3'
miRNA:   3'- uGUAGU---UGGACGUg--GC-CAUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 6359 0.68 0.690289
Target:  5'- gGCcgCAuCC-GCACCGGcUACaGUCGGCc -3'
miRNA:   3'- -UGuaGUuGGaCGUGGCC-AUG-CAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 9241 0.7 0.555876
Target:  5'- -aGUCGuacGCCUGCGaccaCGGUGCGgcCGACa -3'
miRNA:   3'- ugUAGU---UGGACGUg---GCCAUGCa-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 11863 0.67 0.723323
Target:  5'- gGCAUCGGcCCUGCACgacGUGCcccUCGACg -3'
miRNA:   3'- -UGUAGUU-GGACGUGgc-CAUGc--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 26824 0.66 0.796504
Target:  5'- cGCAUCAcugcuGCCgGCACCcGGcGCGcCGAg -3'
miRNA:   3'- -UGUAGU-----UGGaCGUGG-CCaUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 13795 0.66 0.796504
Target:  5'- gACggCGGCCccgacaCGCCccugaGGUACGUCGACa -3'
miRNA:   3'- -UGuaGUUGGac----GUGG-----CCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 45655 0.7 0.544869
Target:  5'- gACAUCcccacgAGCCUcGCGCgGGUaACGUCGAg -3'
miRNA:   3'- -UGUAG------UUGGA-CGUGgCCA-UGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 47863 0.7 0.533935
Target:  5'- gGCAUgGGCCcgGCGaCGGUgACGUCGGCc -3'
miRNA:   3'- -UGUAgUUGGa-CGUgGCCA-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 22227 0.7 0.566946
Target:  5'- gACcUCGACCaUGCGCUcg-ACGUCGACg -3'
miRNA:   3'- -UGuAGUUGG-ACGUGGccaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 4206 0.69 0.634213
Target:  5'- gGCGgcgCGGCagaUGCugCGGUACGcCGAg -3'
miRNA:   3'- -UGUa--GUUGg--ACGugGCCAUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 22672 0.66 0.765981
Target:  5'- -gGUCAGUCgcGUACaGGUACGUCGGCg -3'
miRNA:   3'- ugUAGUUGGa-CGUGgCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 48379 0.75 0.306547
Target:  5'- gGCGaCGGCgCUGCGCUGGgagaACGUCGACc -3'
miRNA:   3'- -UGUaGUUG-GACGUGGCCa---UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 35711 0.72 0.439832
Target:  5'- gACGUC-GCCgGUACCGGacacuccggagACGUCGACg -3'
miRNA:   3'- -UGUAGuUGGaCGUGGCCa----------UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 20903 0.71 0.470215
Target:  5'- uCGUCGACCU-CGCCGucguCGUCGACg -3'
miRNA:   3'- uGUAGUUGGAcGUGGCcau-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 39469 0.7 0.566946
Target:  5'- -gAUCGGCCUGCAgCCGGcgGCGcUCG-Cg -3'
miRNA:   3'- ugUAGUUGGACGU-GGCCa-UGC-AGCuG- -5'
26388 3' -53.2 NC_005345.2 + 39337 0.7 0.578071
Target:  5'- gGCAUCGGCg-GCACCGGc-CG-CGACa -3'
miRNA:   3'- -UGUAGUUGgaCGUGGCCauGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 18772 0.67 0.734161
Target:  5'- cGCcUCGACCUGCGCCcgccgcGGgcugcCGUCGGg -3'
miRNA:   3'- -UGuAGUUGGACGUGG------CCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 22541 0.67 0.734161
Target:  5'- cACAcCGGCCUGCGCCGcaGCGagcgCGAg -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcaUGCa---GCUg -5'
26388 3' -53.2 NC_005345.2 + 245 0.67 0.723323
Target:  5'- gGCAgaGACCccCGCCGuGUAUGUCGGCg -3'
miRNA:   3'- -UGUagUUGGacGUGGC-CAUGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.