miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 39394 0.67 0.755502
Target:  5'- gGCGgcgCAaucGCCgUGC-CCGGgaGCGUCGGCg -3'
miRNA:   3'- -UGUa--GU---UGG-ACGuGGCCa-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 22672 0.66 0.765981
Target:  5'- -gGUCAGUCgcGUACaGGUACGUCGGCg -3'
miRNA:   3'- ugUAGUUGGa-CGUGgCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 39900 0.66 0.765981
Target:  5'- -uGUCGGCC-GCACCGuGgucgcgGCGUaCGACu -3'
miRNA:   3'- ugUAGUUGGaCGUGGC-Ca-----UGCA-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 22386 0.66 0.765981
Target:  5'- cGCcgC-ACCcGCGCCGGggacuCGUCGAg -3'
miRNA:   3'- -UGuaGuUGGaCGUGGCCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 42781 0.66 0.776315
Target:  5'- aAC-UCGGCCgacUGUAgCCGGUGCGgaugCGGCc -3'
miRNA:   3'- -UGuAGUUGG---ACGU-GGCCAUGCa---GCUG- -5'
26388 3' -53.2 NC_005345.2 + 15667 0.66 0.796504
Target:  5'- cGCGcCGACCUGCACCGu--CGgcCGGCc -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcauGCa-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 15599 0.67 0.712391
Target:  5'- --uUCAgGCCUGCGCCGa-GCGUCGuCa -3'
miRNA:   3'- uguAGU-UGGACGUGGCcaUGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 40751 0.68 0.667953
Target:  5'- cCGUCGACCgGCAgCGGcuCGUCGGg -3'
miRNA:   3'- uGUAGUUGGaCGUgGCCauGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 48379 0.75 0.306547
Target:  5'- gGCGaCGGCgCUGCGCUGGgagaACGUCGACc -3'
miRNA:   3'- -UGUaGUUG-GACGUGGCCa---UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 35711 0.72 0.439832
Target:  5'- gACGUC-GCCgGUACCGGacacuccggagACGUCGACg -3'
miRNA:   3'- -UGUAGuUGGaCGUGGCCa----------UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 20903 0.71 0.470215
Target:  5'- uCGUCGACCU-CGCCGucguCGUCGACg -3'
miRNA:   3'- uGUAGUUGGAcGUGGCcau-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 39469 0.7 0.566946
Target:  5'- -gAUCGGCCUGCAgCCGGcgGCGcUCG-Cg -3'
miRNA:   3'- ugUAGUUGGACGU-GGCCa-UGC-AGCuG- -5'
26388 3' -53.2 NC_005345.2 + 39337 0.7 0.578071
Target:  5'- gGCAUCGGCg-GCACCGGc-CG-CGACa -3'
miRNA:   3'- -UGUAGUUGgaCGUGGCCauGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 32993 0.69 0.589243
Target:  5'- cGCAggCGGCCgggGUGgCGGggGCGUCGACg -3'
miRNA:   3'- -UGUa-GUUGGa--CGUgGCCa-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 34720 0.69 0.600453
Target:  5'- aGCAgagcgCGACCUcgaucGC-CCGGcagGCGUCGGCg -3'
miRNA:   3'- -UGUa----GUUGGA-----CGuGGCCa--UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 34361 0.69 0.611691
Target:  5'- gACGUCGAagcGCACCGGggcguUGCaGUCGACg -3'
miRNA:   3'- -UGUAGUUggaCGUGGCC-----AUG-CAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 44265 0.69 0.611691
Target:  5'- aGCAUCGACUcgcagcgGCGCCGGUagucccccucgAUGUCGuCg -3'
miRNA:   3'- -UGUAGUUGGa------CGUGGCCA-----------UGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 37965 0.69 0.634213
Target:  5'- gGCGUCGACCagGCugCGGaccUGCGcCGGg -3'
miRNA:   3'- -UGUAGUUGGa-CGugGCC---AUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 3141 0.68 0.656727
Target:  5'- uGCA-CAGCC-GUGCCGacgGCGUCGGCg -3'
miRNA:   3'- -UGUaGUUGGaCGUGGCca-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 33308 0.68 0.656727
Target:  5'- -gAUCAgaACCUGCGCgguguagcuCGGgcCGUCGGCc -3'
miRNA:   3'- ugUAGU--UGGACGUG---------GCCauGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.