miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 44265 0.69 0.611691
Target:  5'- aGCAUCGACUcgcagcgGCGCCGGUagucccccucgAUGUCGuCg -3'
miRNA:   3'- -UGUAGUUGGa------CGUGGCCA-----------UGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 18772 0.67 0.734161
Target:  5'- cGCcUCGACCUGCGCCcgccgcGGgcugcCGUCGGg -3'
miRNA:   3'- -UGuAGUUGGACGUGG------CCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 22541 0.67 0.734161
Target:  5'- cACAcCGGCCUGCGCCGcaGCGagcgCGAg -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcaUGCa---GCUg -5'
26388 3' -53.2 NC_005345.2 + 245 0.67 0.723323
Target:  5'- gGCAgaGACCccCGCCGuGUAUGUCGGCg -3'
miRNA:   3'- -UGUagUUGGacGUGGC-CAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15599 0.67 0.712391
Target:  5'- --uUCAgGCCUGCGCCGa-GCGUCGuCa -3'
miRNA:   3'- uguAGU-UGGACGUGGCcaUGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 40751 0.68 0.667953
Target:  5'- cCGUCGACCgGCAgCGGcuCGUCGGg -3'
miRNA:   3'- uGUAGUUGGaCGUgGCCauGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 33308 0.68 0.656727
Target:  5'- -gAUCAgaACCUGCGCgguguagcuCGGgcCGUCGGCc -3'
miRNA:   3'- ugUAGU--UGGACGUG---------GCCauGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 3141 0.68 0.656727
Target:  5'- uGCA-CAGCC-GUGCCGacgGCGUCGGCg -3'
miRNA:   3'- -UGUaGUUGGaCGUGGCca-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 37965 0.69 0.634213
Target:  5'- gGCGUCGACCagGCugCGGaccUGCGcCGGg -3'
miRNA:   3'- -UGUAGUUGGa-CGugGCC---AUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 43330 0.67 0.734161
Target:  5'- aGCGggCGAgCUGCugCGcGUACGgcUCGACc -3'
miRNA:   3'- -UGUa-GUUgGACGugGC-CAUGC--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 32102 0.67 0.744891
Target:  5'- --uUCGACCUcgggcucgggcaGCGCgGGUGCGagGGCg -3'
miRNA:   3'- uguAGUUGGA------------CGUGgCCAUGCagCUG- -5'
26388 3' -53.2 NC_005345.2 + 22278 0.67 0.755502
Target:  5'- cCAUCGACC-GCACCGccGCuGUCGGg -3'
miRNA:   3'- uGUAGUUGGaCGUGGCcaUG-CAGCUg -5'
26388 3' -53.2 NC_005345.2 + 21891 0.66 0.802424
Target:  5'- gACAgCAGCCgguuccgccccucGCuCCGG-GCGUCGACg -3'
miRNA:   3'- -UGUaGUUGGa------------CGuGGCCaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15667 0.66 0.796504
Target:  5'- cGCGcCGACCUGCACCGu--CGgcCGGCc -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcauGCa-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 42781 0.66 0.776315
Target:  5'- aAC-UCGGCCgacUGUAgCCGGUGCGgaugCGGCc -3'
miRNA:   3'- -UGuAGUUGG---ACGU-GGCCAUGCa---GCUG- -5'
26388 3' -53.2 NC_005345.2 + 22386 0.66 0.765981
Target:  5'- cGCcgC-ACCcGCGCCGGggacuCGUCGAg -3'
miRNA:   3'- -UGuaGuUGGaCGUGGCCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 39900 0.66 0.765981
Target:  5'- -uGUCGGCC-GCACCGuGgucgcgGCGUaCGACu -3'
miRNA:   3'- ugUAGUUGGaCGUGGC-Ca-----UGCA-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 22672 0.66 0.765981
Target:  5'- -gGUCAGUCgcGUACaGGUACGUCGGCg -3'
miRNA:   3'- ugUAGUUGGa-CGUGgCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 25532 0.66 0.765981
Target:  5'- uGCG-CAGCCgUGC-CCGGUcCGcCGGCg -3'
miRNA:   3'- -UGUaGUUGG-ACGuGGCCAuGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 39394 0.67 0.755502
Target:  5'- gGCGgcgCAaucGCCgUGC-CCGGgaGCGUCGGCg -3'
miRNA:   3'- -UGUa--GU---UGG-ACGuGGCCa-UGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.