miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 42781 0.66 0.776315
Target:  5'- aAC-UCGGCCgacUGUAgCCGGUGCGgaugCGGCc -3'
miRNA:   3'- -UGuAGUUGG---ACGU-GGCCAUGCa---GCUG- -5'
26388 3' -53.2 NC_005345.2 + 22386 0.66 0.765981
Target:  5'- cGCcgC-ACCcGCGCCGGggacuCGUCGAg -3'
miRNA:   3'- -UGuaGuUGGaCGUGGCCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 39900 0.66 0.765981
Target:  5'- -uGUCGGCC-GCACCGuGgucgcgGCGUaCGACu -3'
miRNA:   3'- ugUAGUUGGaCGUGGC-Ca-----UGCA-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 22672 0.66 0.765981
Target:  5'- -gGUCAGUCgcGUACaGGUACGUCGGCg -3'
miRNA:   3'- ugUAGUUGGa-CGUGgCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 25532 0.66 0.765981
Target:  5'- uGCG-CAGCCgUGC-CCGGUcCGcCGGCg -3'
miRNA:   3'- -UGUaGUUGG-ACGuGGCCAuGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 22541 0.67 0.734161
Target:  5'- cACAcCGGCCUGCGCCGcaGCGagcgCGAg -3'
miRNA:   3'- -UGUaGUUGGACGUGGCcaUGCa---GCUg -5'
26388 3' -53.2 NC_005345.2 + 18772 0.67 0.734161
Target:  5'- cGCcUCGACCUGCGCCcgccgcGGgcugcCGUCGGg -3'
miRNA:   3'- -UGuAGUUGGACGUGG------CCau---GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 43330 0.67 0.734161
Target:  5'- aGCGggCGAgCUGCugCGcGUACGgcUCGACc -3'
miRNA:   3'- -UGUa-GUUgGACGugGC-CAUGC--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 32102 0.67 0.744891
Target:  5'- --uUCGACCUcgggcucgggcaGCGCgGGUGCGagGGCg -3'
miRNA:   3'- uguAGUUGGA------------CGUGgCCAUGCagCUG- -5'
26388 3' -53.2 NC_005345.2 + 22278 0.67 0.755502
Target:  5'- cCAUCGACC-GCACCGccGCuGUCGGg -3'
miRNA:   3'- uGUAGUUGGaCGUGGCcaUG-CAGCUg -5'
26388 3' -53.2 NC_005345.2 + 39394 0.67 0.755502
Target:  5'- gGCGgcgCAaucGCCgUGC-CCGGgaGCGUCGGCg -3'
miRNA:   3'- -UGUa--GU---UGG-ACGuGGCCa-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 1344 0.71 0.523079
Target:  5'- -gGUCGcgguaacgcGCCUGCcacgaGCCGGUgcagucGCGUCGGCg -3'
miRNA:   3'- ugUAGU---------UGGACG-----UGGCCA------UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 46574 0.71 0.501632
Target:  5'- cCGUCAGCCUcgGCcCCGaGcACGUCGACc -3'
miRNA:   3'- uGUAGUUGGA--CGuGGC-CaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 5858 0.72 0.449837
Target:  5'- cGCGUCGACCU-CGCCGaGgACGUCGuCg -3'
miRNA:   3'- -UGUAGUUGGAcGUGGC-CaUGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 14778 0.72 0.449837
Target:  5'- uCGUCGACUgcaacGCcCCGGUGCGcuUCGACg -3'
miRNA:   3'- uGUAGUUGGa----CGuGGCCAUGC--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 7218 0.74 0.347305
Target:  5'- -uGUCGACacgGCgACCGGUGuCGUCGGCg -3'
miRNA:   3'- ugUAGUUGga-CG-UGGCCAU-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 44650 0.75 0.314396
Target:  5'- --cUCGACCUGCugCGGUGggcacggcuCGUCGAg -3'
miRNA:   3'- uguAGUUGGACGugGCCAU---------GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 10901 0.77 0.242616
Target:  5'- cACGUCAucgaucacGCCUGCACCGGUccgcGCGUCc-- -3'
miRNA:   3'- -UGUAGU--------UGGACGUGGCCA----UGCAGcug -5'
26388 3' -53.2 NC_005345.2 + 47686 0.77 0.217958
Target:  5'- cGCAUCAcgGCCgacgGCAuCCGGUACGaCGACc -3'
miRNA:   3'- -UGUAGU--UGGa---CGU-GGCCAUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 16355 0.66 0.806334
Target:  5'- gGCAUCGcgGCCgGCGCCgcGGUGauCG-CGACg -3'
miRNA:   3'- -UGUAGU--UGGaCGUGG--CCAU--GCaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.