miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 3' -53.2 NC_005345.2 + 12840 0.67 0.755502
Target:  5'- cGCAUCAccgGCgaGgACCGGUgACGUCGu- -3'
miRNA:   3'- -UGUAGU---UGgaCgUGGCCA-UGCAGCug -5'
26388 3' -53.2 NC_005345.2 + 13795 0.66 0.796504
Target:  5'- gACggCGGCCccgacaCGCCccugaGGUACGUCGACa -3'
miRNA:   3'- -UGuaGUUGGac----GUGG-----CCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 24568 0.66 0.796504
Target:  5'- uCGUCGccgGCCUGCGguaCGcGUACGgCGACa -3'
miRNA:   3'- uGUAGU---UGGACGUg--GC-CAUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 26824 0.66 0.796504
Target:  5'- cGCAUCAcugcuGCCgGCACCcGGcGCGcCGAg -3'
miRNA:   3'- -UGUAGU-----UGGaCGUGG-CCaUGCaGCUg -5'
26388 3' -53.2 NC_005345.2 + 18919 0.66 0.796504
Target:  5'- uCGUCGACCgGCucaccGCCGGaUGCG-CGAUc -3'
miRNA:   3'- uGUAGUUGGaCG-----UGGCC-AUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 15310 0.69 0.600453
Target:  5'- uCGUCGcccGgCUGUAggUCGGUGCGUCGGCc -3'
miRNA:   3'- uGUAGU---UgGACGU--GGCCAUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 22227 0.7 0.566946
Target:  5'- gACcUCGACCaUGCGCUcg-ACGUCGACg -3'
miRNA:   3'- -UGuAGUUGG-ACGUGGccaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 47686 0.77 0.217958
Target:  5'- cGCAUCAcgGCCgacgGCAuCCGGUACGaCGACc -3'
miRNA:   3'- -UGUAGU--UGGa---CGU-GGCCAUGCaGCUG- -5'
26388 3' -53.2 NC_005345.2 + 10901 0.77 0.242616
Target:  5'- cACGUCAucgaucacGCCUGCACCGGUccgcGCGUCc-- -3'
miRNA:   3'- -UGUAGU--------UGGACGUGGCCA----UGCAGcug -5'
26388 3' -53.2 NC_005345.2 + 44650 0.75 0.314396
Target:  5'- --cUCGACCUGCugCGGUGggcacggcuCGUCGAg -3'
miRNA:   3'- uguAGUUGGACGugGCCAU---------GCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 7218 0.74 0.347305
Target:  5'- -uGUCGACacgGCgACCGGUGuCGUCGGCg -3'
miRNA:   3'- ugUAGUUGga-CG-UGGCCAU-GCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 14778 0.72 0.449837
Target:  5'- uCGUCGACUgcaacGCcCCGGUGCGcuUCGACg -3'
miRNA:   3'- uGUAGUUGGa----CGuGGCCAUGC--AGCUG- -5'
26388 3' -53.2 NC_005345.2 + 5858 0.72 0.449837
Target:  5'- cGCGUCGACCU-CGCCGaGgACGUCGuCg -3'
miRNA:   3'- -UGUAGUUGGAcGUGGC-CaUGCAGCuG- -5'
26388 3' -53.2 NC_005345.2 + 46574 0.71 0.501632
Target:  5'- cCGUCAGCCUcgGCcCCGaGcACGUCGACc -3'
miRNA:   3'- uGUAGUUGGA--CGuGGC-CaUGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 1344 0.71 0.523079
Target:  5'- -gGUCGcgguaacgcGCCUGCcacgaGCCGGUgcagucGCGUCGGCg -3'
miRNA:   3'- ugUAGU---------UGGACG-----UGGCCA------UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 13409 0.7 0.533935
Target:  5'- --uUCGuCCUGCGCCGcacCGUCGACg -3'
miRNA:   3'- uguAGUuGGACGUGGCcauGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 47863 0.7 0.533935
Target:  5'- gGCAUgGGCCcgGCGaCGGUgACGUCGGCc -3'
miRNA:   3'- -UGUAgUUGGa-CGUgGCCA-UGCAGCUG- -5'
26388 3' -53.2 NC_005345.2 + 45655 0.7 0.544869
Target:  5'- gACAUCcccacgAGCCUcGCGCgGGUaACGUCGAg -3'
miRNA:   3'- -UGUAG------UUGGA-CGUGgCCA-UGCAGCUg -5'
26388 3' -53.2 NC_005345.2 + 9241 0.7 0.555876
Target:  5'- -aGUCGuacGCCUGCGaccaCGGUGCGgcCGACa -3'
miRNA:   3'- ugUAGU---UGGACGUg---GCCAUGCa-GCUG- -5'
26388 3' -53.2 NC_005345.2 + 34827 0.7 0.555876
Target:  5'- cCAUCGGCCUGaucauCACCGGgauCG-CGGCg -3'
miRNA:   3'- uGUAGUUGGAC-----GUGGCCau-GCaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.