miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 18502 0.66 0.772078
Target:  5'- cGGGUCGAgGuCGA-GCGAguaCGCGGc- -3'
miRNA:   3'- -UCCAGCUgCuGCUgCGCUa--GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 9980 0.66 0.772078
Target:  5'- gGGGUCcgccuCGACcACGUGAaaGCGAAGa -3'
miRNA:   3'- -UCCAGcu---GCUGcUGCGCUagCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 23593 0.66 0.772078
Target:  5'- cGGGUCG-CGGCGuucgGCGCGA-CGcCGgcGg -3'
miRNA:   3'- -UCCAGCuGCUGC----UGCGCUaGC-GCuuC- -5'
26388 5' -54.8 NC_005345.2 + 15982 0.66 0.768054
Target:  5'- gAGGUCguccguaccucuGugGGCGACGUGcugcccgaggccCGCGAGGg -3'
miRNA:   3'- -UCCAG------------CugCUGCUGCGCua----------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 16348 0.66 0.761977
Target:  5'- -cGUCGGCGGCaucgcggccGGCGCcgcgguGAUCGCGAc- -3'
miRNA:   3'- ucCAGCUGCUG---------CUGCG------CUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 10664 0.66 0.761977
Target:  5'- cGGGUCGGCGAgcCGAUcaggguguGCG-UCGCGucGu -3'
miRNA:   3'- -UCCAGCUGCU--GCUG--------CGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 35565 0.66 0.761977
Target:  5'- cGGGcUCGccCGG-GACGCGAUCuCGAAGg -3'
miRNA:   3'- -UCC-AGCu-GCUgCUGCGCUAGcGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 29408 0.66 0.761977
Target:  5'- cGGUgcacgCGACaGCGACGCcGAUCaGCGAu- -3'
miRNA:   3'- uCCA-----GCUGcUGCUGCG-CUAG-CGCUuc -5'
26388 5' -54.8 NC_005345.2 + 563 0.66 0.761977
Target:  5'- gAGGUCGuACGGguccucgccaauCGGgGUGAUCGUGGGa -3'
miRNA:   3'- -UCCAGC-UGCU------------GCUgCGCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 29692 0.66 0.751744
Target:  5'- ---aCGcCGGCGaACGCGAUCGCGc-- -3'
miRNA:   3'- uccaGCuGCUGC-UGCGCUAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 35083 0.66 0.751744
Target:  5'- aAGGUCuuguucGCGAuCGuCGUGGUCGCGGu- -3'
miRNA:   3'- -UCCAGc-----UGCU-GCuGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 48371 0.66 0.751744
Target:  5'- uGGGgcgaGGCGACGGCGCug-CGCugGGAGa -3'
miRNA:   3'- -UCCag--CUGCUGCUGCGcuaGCG--CUUC- -5'
26388 5' -54.8 NC_005345.2 + 5609 0.66 0.751744
Target:  5'- -uGUCGGCGACGAgcucgGCGAUccgcucCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGCUg----CGCUA------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 3435 0.66 0.751744
Target:  5'- cGG-CGGgCGGCGAUGCGGgccccgagcUCGCGcGGg -3'
miRNA:   3'- uCCaGCU-GCUGCUGCGCU---------AGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 35486 0.66 0.74139
Target:  5'- cGGcGUCGAgGGCGGCGCGcugcUCGuCGGc- -3'
miRNA:   3'- -UC-CAGCUgCUGCUGCGCu---AGC-GCUuc -5'
26388 5' -54.8 NC_005345.2 + 28429 0.66 0.74139
Target:  5'- cGGUCGcCGAgGGcCGCGAgauguacCGCGAGc -3'
miRNA:   3'- uCCAGCuGCUgCU-GCGCUa------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 28088 0.66 0.74139
Target:  5'- -cGUCGAgaagaagauCGACGAgGCGGUCGCc--- -3'
miRNA:   3'- ucCAGCU---------GCUGCUgCGCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 11843 0.66 0.74139
Target:  5'- gAGGUCGACGccACGGCGUGGgcaUCGg---- -3'
miRNA:   3'- -UCCAGCUGC--UGCUGCGCU---AGCgcuuc -5'
26388 5' -54.8 NC_005345.2 + 15977 0.66 0.74139
Target:  5'- -aGUUGGCGAUGuGCGCGGcgucgagguucaUCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGC-UGCGCU------------AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 11217 0.66 0.74139
Target:  5'- -cGUCGGCGuCGAgGCGucCGCGAAc -3'
miRNA:   3'- ucCAGCUGCuGCUgCGCuaGCGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.