miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 18502 0.66 0.772078
Target:  5'- cGGGUCGAgGuCGA-GCGAguaCGCGGc- -3'
miRNA:   3'- -UCCAGCUgCuGCUgCGCUa--GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 28123 0.66 0.720366
Target:  5'- gGGGuccucUCGGCGGCGAgGgGGUaUGCGAAa -3'
miRNA:   3'- -UCC-----AGCUGCUGCUgCgCUA-GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 10042 0.66 0.720366
Target:  5'- cGuGUCGAgacggagaacCGACGACGCcGAcgUCGCGgcGa -3'
miRNA:   3'- uC-CAGCU----------GCUGCUGCG-CU--AGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 7271 0.66 0.720366
Target:  5'- aAGcGUCGcCGcCcGCGCGAUCGcCGAGGc -3'
miRNA:   3'- -UC-CAGCuGCuGcUGCGCUAGC-GCUUC- -5'
26388 5' -54.8 NC_005345.2 + 22247 0.66 0.717181
Target:  5'- -cGUCGACGGCGaggugcugccguggGCGCagcgGAUCGuCGAGGc -3'
miRNA:   3'- ucCAGCUGCUGC--------------UGCG----CUAGC-GCUUC- -5'
26388 5' -54.8 NC_005345.2 + 10042 0.66 0.730927
Target:  5'- cGGGcugcUCGcCGAgGACGCGAUCGgGu-- -3'
miRNA:   3'- -UCC----AGCuGCUgCUGCGCUAGCgCuuc -5'
26388 5' -54.8 NC_005345.2 + 11843 0.66 0.74139
Target:  5'- gAGGUCGACGccACGGCGUGGgcaUCGg---- -3'
miRNA:   3'- -UCCAGCUGC--UGCUGCGCU---AGCgcuuc -5'
26388 5' -54.8 NC_005345.2 + 28429 0.66 0.74139
Target:  5'- cGGUCGcCGAgGGcCGCGAgauguacCGCGAGc -3'
miRNA:   3'- uCCAGCuGCUgCU-GCGCUa------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 39763 0.66 0.74139
Target:  5'- -cGUCGACGACGGCgaggaggagugGCGggUGUGGAc -3'
miRNA:   3'- ucCAGCUGCUGCUG-----------CGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 32098 0.66 0.720366
Target:  5'- cGGGuUCGACcucgggcucgGGCaGCGCGggUGCGAGGg -3'
miRNA:   3'- -UCC-AGCUG----------CUGcUGCGCuaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 33014 0.66 0.720366
Target:  5'- gGGcGUCGACGAUcgGGCuCGGcCGCGggGu -3'
miRNA:   3'- -UC-CAGCUGCUG--CUGcGCUaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 37056 0.66 0.730927
Target:  5'- cGGcCGGCGGCGACGUcgucGAUCugucgcugucgGCGAGc -3'
miRNA:   3'- uCCaGCUGCUGCUGCG----CUAG-----------CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 10664 0.66 0.761977
Target:  5'- cGGGUCGGCGAgcCGAUcaggguguGCG-UCGCGucGu -3'
miRNA:   3'- -UCCAGCUGCU--GCUG--------CGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 48371 0.66 0.751744
Target:  5'- uGGGgcgaGGCGACGGCGCug-CGCugGGAGa -3'
miRNA:   3'- -UCCag--CUGCUGCUGCGcuaGCG--CUUC- -5'
26388 5' -54.8 NC_005345.2 + 3435 0.66 0.751744
Target:  5'- cGG-CGGgCGGCGAUGCGGgccccgagcUCGCGcGGg -3'
miRNA:   3'- uCCaGCU-GCUGCUGCGCU---------AGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 5609 0.66 0.751744
Target:  5'- -uGUCGGCGACGAgcucgGCGAUccgcucCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGCUg----CGCUA------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 15977 0.66 0.74139
Target:  5'- -aGUUGGCGAUGuGCGCGGcgucgagguucaUCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGC-UGCGCU------------AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 11217 0.66 0.74139
Target:  5'- -cGUCGGCGuCGAgGCGucCGCGAAc -3'
miRNA:   3'- ucCAGCUGCuGCUgCGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 35486 0.66 0.74139
Target:  5'- cGGcGUCGAgGGCGGCGCGcugcUCGuCGGc- -3'
miRNA:   3'- -UC-CAGCUgCUGCUGCGCu---AGC-GCUuc -5'
26388 5' -54.8 NC_005345.2 + 40778 0.66 0.730927
Target:  5'- cGGUCGGC--CGGCGCGggCGUGucGc -3'
miRNA:   3'- uCCAGCUGcuGCUGCGCuaGCGCuuC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.