miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 5609 0.66 0.751744
Target:  5'- -uGUCGGCGACGAgcucgGCGAUccgcucCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGCUg----CGCUA------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 3435 0.66 0.751744
Target:  5'- cGG-CGGgCGGCGAUGCGGgccccgagcUCGCGcGGg -3'
miRNA:   3'- uCCaGCU-GCUGCUGCGCU---------AGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 48371 0.66 0.751744
Target:  5'- uGGGgcgaGGCGACGGCGCug-CGCugGGAGa -3'
miRNA:   3'- -UCCag--CUGCUGCUGCGcuaGCG--CUUC- -5'
26388 5' -54.8 NC_005345.2 + 10664 0.66 0.761977
Target:  5'- cGGGUCGGCGAgcCGAUcaggguguGCG-UCGCGucGu -3'
miRNA:   3'- -UCCAGCUGCU--GCUG--------CGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 18502 0.66 0.772078
Target:  5'- cGGGUCGAgGuCGA-GCGAguaCGCGGc- -3'
miRNA:   3'- -UCCAGCUgCuGCUgCGCUa--GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 33014 0.66 0.720366
Target:  5'- gGGcGUCGACGAUcgGGCuCGGcCGCGggGu -3'
miRNA:   3'- -UC-CAGCUGCUG--CUGcGCUaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 10042 0.66 0.720366
Target:  5'- cGuGUCGAgacggagaacCGACGACGCcGAcgUCGCGgcGa -3'
miRNA:   3'- uC-CAGCU----------GCUGCUGCG-CU--AGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 28123 0.66 0.720366
Target:  5'- gGGGuccucUCGGCGGCGAgGgGGUaUGCGAAa -3'
miRNA:   3'- -UCC-----AGCUGCUGCUgCgCUA-GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 32098 0.66 0.720366
Target:  5'- cGGGuUCGACcucgggcucgGGCaGCGCGggUGCGAGGg -3'
miRNA:   3'- -UCC-AGCUG----------CUGcUGCGCuaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 37056 0.66 0.730927
Target:  5'- cGGcCGGCGGCGACGUcgucGAUCugucgcugucgGCGAGc -3'
miRNA:   3'- uCCaGCUGCUGCUGCG----CUAG-----------CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 15367 0.67 0.688209
Target:  5'- uAGG-CGGCGACGGCag---CGCGggGg -3'
miRNA:   3'- -UCCaGCUGCUGCUGcgcuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 31250 0.67 0.688209
Target:  5'- gGGGUCGGguGCGcacucggguGCGCGggUGCGggGg -3'
miRNA:   3'- -UCCAGCUgcUGC---------UGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 19065 0.67 0.677369
Target:  5'- uGGUCGccuACGGgGucuACGCGAUCGUGcGGg -3'
miRNA:   3'- uCCAGC---UGCUgC---UGCGCUAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 8413 0.67 0.698996
Target:  5'- cGGUCGACGG-GGCGCGGcuggaCGCcGAGc -3'
miRNA:   3'- uCCAGCUGCUgCUGCGCUa----GCGcUUC- -5'
26388 5' -54.8 NC_005345.2 + 20134 0.67 0.666486
Target:  5'- -cGUCGACGuCGACGUucggGAgccaccgCGCGAGGc -3'
miRNA:   3'- ucCAGCUGCuGCUGCG----CUa------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 38573 0.67 0.688209
Target:  5'- cGGcaCGGCGuACGugGCGcUCGCGGc- -3'
miRNA:   3'- uCCa-GCUGC-UGCugCGCuAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 27950 0.67 0.713988
Target:  5'- cGG-CGACGACGACaagcccgaccacaagGcCGAggcCGCGAAGu -3'
miRNA:   3'- uCCaGCUGCUGCUG---------------C-GCUa--GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 22102 0.67 0.698996
Target:  5'- cGGUCGGCGGCucgGugGCGAgcaGCa--- -3'
miRNA:   3'- uCCAGCUGCUG---CugCGCUag-CGcuuc -5'
26388 5' -54.8 NC_005345.2 + 27330 0.67 0.709719
Target:  5'- -aGUCGAUGucGCGugGCGGggCGCGGu- -3'
miRNA:   3'- ucCAGCUGC--UGCugCGCUa-GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 10136 0.67 0.698996
Target:  5'- gAGGUacaGGCGGCGGC-CGcUCuGCGGAGc -3'
miRNA:   3'- -UCCAg--CUGCUGCUGcGCuAG-CGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.