miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 37243 0.67 0.709719
Target:  5'- cGGGaacUCGAUGGCuGACGCGAUguacgacaGCGGAa -3'
miRNA:   3'- -UCC---AGCUGCUG-CUGCGCUAg-------CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 35231 0.67 0.681711
Target:  5'- -aGUCGGCGcucaagccggcguuCGACGCGAUCGUgcucacccuGAAGg -3'
miRNA:   3'- ucCAGCUGCu-------------GCUGCGCUAGCG---------CUUC- -5'
26388 5' -54.8 NC_005345.2 + 2523 0.67 0.709719
Target:  5'- uGGcaUCGACGugGgggguuuccACGCGGUgGCGAc- -3'
miRNA:   3'- uCC--AGCUGCugC---------UGCGCUAgCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 8175 0.67 0.688209
Target:  5'- -cGcCGACGcCGAgGuCGAUCGCGAAa -3'
miRNA:   3'- ucCaGCUGCuGCUgC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 43622 0.67 0.688209
Target:  5'- cAGGUCgGGCccccCGGCGgGGUCGCGGu- -3'
miRNA:   3'- -UCCAG-CUGcu--GCUGCgCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 31250 0.67 0.688209
Target:  5'- gGGGUCGGguGCGcacucggguGCGCGggUGCGggGg -3'
miRNA:   3'- -UCCAGCUgcUGC---------UGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 43457 0.67 0.677369
Target:  5'- aGGGaCGGCGGCGAguuCGCGGcgcagCGCGGu- -3'
miRNA:   3'- -UCCaGCUGCUGCU---GCGCUa----GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 20134 0.67 0.666486
Target:  5'- -cGUCGACGuCGACGUucggGAgccaccgCGCGAGGc -3'
miRNA:   3'- ucCAGCUGCuGCUGCG----CUa------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 19418 0.67 0.709719
Target:  5'- cGGUCGGCuGCGccGCGuCGGUCGCa--- -3'
miRNA:   3'- uCCAGCUGcUGC--UGC-GCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 10136 0.67 0.698996
Target:  5'- gAGGUacaGGCGGCGGC-CGcUCuGCGGAGc -3'
miRNA:   3'- -UCCAg--CUGCUGCUGcGCuAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 22102 0.67 0.698996
Target:  5'- cGGUCGGCGGCucgGugGCGAgcaGCa--- -3'
miRNA:   3'- uCCAGCUGCUG---CugCGCUag-CGcuuc -5'
26388 5' -54.8 NC_005345.2 + 7239 0.67 0.677369
Target:  5'- -cGUCGGCGACGACcaggGCGA-CGaCGAGc -3'
miRNA:   3'- ucCAGCUGCUGCUG----CGCUaGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 19065 0.67 0.677369
Target:  5'- uGGUCGccuACGGgGucuACGCGAUCGUGcGGg -3'
miRNA:   3'- uCCAGC---UGCUgC---UGCGCUAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 8413 0.67 0.698996
Target:  5'- cGGUCGACGG-GGCGCGGcuggaCGCcGAGc -3'
miRNA:   3'- uCCAGCUGCUgCUGCGCUa----GCGcUUC- -5'
26388 5' -54.8 NC_005345.2 + 38970 0.67 0.666486
Target:  5'- cGGUCGA-GAuCGGCGCGAccaccgUCGCGu-- -3'
miRNA:   3'- uCCAGCUgCU-GCUGCGCU------AGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 45134 0.68 0.611799
Target:  5'- cAGGUCGAgGACGuCGUGAauguugcucUCGaCGAGc -3'
miRNA:   3'- -UCCAGCUgCUGCuGCGCU---------AGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 1228 0.68 0.644636
Target:  5'- cGGGUCGGCGuACGuC-CGuUCGCGGAc -3'
miRNA:   3'- -UCCAGCUGC-UGCuGcGCuAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 18937 0.68 0.633688
Target:  5'- -cGUCGGCGuCGACGuUGAUCucguggcgGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGC-GCUAG--------CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 30445 0.68 0.62274
Target:  5'- ---gCGAUGACGACGCcGAcCGCGAu- -3'
miRNA:   3'- uccaGCUGCUGCUGCG-CUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 11577 0.68 0.644636
Target:  5'- cAGcUCGACGACGGgcgccuCGCGGUgGCGuGGg -3'
miRNA:   3'- -UCcAGCUGCUGCU------GCGCUAgCGCuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.