Results 61 - 80 of 129 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 21333 | 0.68 | 0.62274 |
Target: 5'- uGGGUCGACaGCGAuCGaCGAUC-CGAGc -3' miRNA: 3'- -UCCAGCUGcUGCU-GC-GCUAGcGCUUc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 1228 | 0.68 | 0.644636 |
Target: 5'- cGGGUCGGCGuACGuC-CGuUCGCGGAc -3' miRNA: 3'- -UCCAGCUGC-UGCuGcGCuAGCGCUUc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 11577 | 0.68 | 0.644636 |
Target: 5'- cAGcUCGACGACGGgcgccuCGCGGUgGCGuGGg -3' miRNA: 3'- -UCcAGCUGCUGCU------GCGCUAgCGCuUC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 17647 | 0.68 | 0.644636 |
Target: 5'- cGGUCGGucACGAcCGUGuUCGCGggGc -3' miRNA: 3'- uCCAGCUgcUGCU-GCGCuAGCGCuuC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 1089 | 0.68 | 0.644636 |
Target: 5'- --cUCGACGGCGACgaGCGGUgCGCGccGg -3' miRNA: 3'- uccAGCUGCUGCUG--CGCUA-GCGCuuC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 9172 | 0.68 | 0.600876 |
Target: 5'- uAGGacUCGGCGAgCGugGCGAggaaUCGCGc-- -3' miRNA: 3'- -UCC--AGCUGCU-GCugCGCU----AGCGCuuc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 14903 | 0.68 | 0.600876 |
Target: 5'- cAGGUCGAgGAC--CGCGuUCGCGGc- -3' miRNA: 3'- -UCCAGCUgCUGcuGCGCuAGCGCUuc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 34518 | 0.68 | 0.611799 |
Target: 5'- cGGUCGA-GGCGGgcCGCGGccUCGCGGGc -3' miRNA: 3'- uCCAGCUgCUGCU--GCGCU--AGCGCUUc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 14337 | 0.68 | 0.655572 |
Target: 5'- aGGGgcaGGCGcACGGCGUG--CGCGAGGa -3' miRNA: 3'- -UCCag-CUGC-UGCUGCGCuaGCGCUUC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 27985 | 0.68 | 0.62274 |
Target: 5'- -cGUCGACgGGCGGgGCG-UCGCGuAGGg -3' miRNA: 3'- ucCAGCUG-CUGCUgCGCuAGCGC-UUC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 30445 | 0.68 | 0.62274 |
Target: 5'- ---gCGAUGACGACGCcGAcCGCGAu- -3' miRNA: 3'- uccaGCUGCUGCUGCG-CUaGCGCUuc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 12419 | 0.68 | 0.600876 |
Target: 5'- cGGcCGAUGACGucgagGCGCG-UCGCGcGGg -3' miRNA: 3'- uCCaGCUGCUGC-----UGCGCuAGCGCuUC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 23998 | 0.68 | 0.600876 |
Target: 5'- -aGUCGcCGuucguCGGCGCGAUCGCGc-- -3' miRNA: 3'- ucCAGCuGCu----GCUGCGCUAGCGCuuc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 12762 | 0.68 | 0.62274 |
Target: 5'- cGGccgCGGCaGACGugGCGcgCGUGGAc -3' miRNA: 3'- uCCa--GCUG-CUGCugCGCuaGCGCUUc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 18937 | 0.68 | 0.633688 |
Target: 5'- -cGUCGGCGuCGACGuUGAUCucguggcgGCGAGGa -3' miRNA: 3'- ucCAGCUGCuGCUGC-GCUAG--------CGCUUC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 27316 | 0.69 | 0.589979 |
Target: 5'- gGGGUCGAgUGGCugaGAgGCGAUCuGCGGAc -3' miRNA: 3'- -UCCAGCU-GCUG---CUgCGCUAG-CGCUUc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 23248 | 0.69 | 0.5683 |
Target: 5'- cGGGUCGuacuCGACGAUGCacUCGCucGGg -3' miRNA: 3'- -UCCAGCu---GCUGCUGCGcuAGCGcuUC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 3721 | 0.69 | 0.5683 |
Target: 5'- gGGGUgccugcgaCGuCGACGACGCGGUCGaaGAAc -3' miRNA: 3'- -UCCA--------GCuGCUGCUGCGCUAGCg-CUUc -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 3526 | 0.69 | 0.5683 |
Target: 5'- cAGGUucCGGCGACGAUGUcgaucaGGUCGUGcAGg -3' miRNA: 3'- -UCCA--GCUGCUGCUGCG------CUAGCGCuUC- -5' |
|||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 41031 | 0.69 | 0.545758 |
Target: 5'- -cGUCGACGACGGCGgccggguCGGUCuuGCGGAa -3' miRNA: 3'- ucCAGCUGCUGCUGC-------GCUAG--CGCUUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home