miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 23248 0.69 0.5683
Target:  5'- cGGGUCGuacuCGACGAUGCacUCGCucGGg -3'
miRNA:   3'- -UCCAGCu---GCUGCUGCGcuAGCGcuUC- -5'
26388 5' -54.8 NC_005345.2 + 29998 0.69 0.546825
Target:  5'- cGGGccCGGCGACGACGUcccggccgaGGUCGCcGAGc -3'
miRNA:   3'- -UCCa-GCUGCUGCUGCG---------CUAGCGcUUC- -5'
26388 5' -54.8 NC_005345.2 + 24890 0.69 0.5683
Target:  5'- gAGGaUGcCGACGACGUGAUCG-GAGa -3'
miRNA:   3'- -UCCaGCuGCUGCUGCGCUAGCgCUUc -5'
26388 5' -54.8 NC_005345.2 + 5425 0.69 0.589979
Target:  5'- cGG-CGGCGACGACGgCGuUCGUaucGAGGu -3'
miRNA:   3'- uCCaGCUGCUGCUGC-GCuAGCG---CUUC- -5'
26388 5' -54.8 NC_005345.2 + 42129 0.69 0.579118
Target:  5'- cGGUCGAcCGGCGacccgGCGuCGAUCGCa--- -3'
miRNA:   3'- uCCAGCU-GCUGC-----UGC-GCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 3721 0.69 0.5683
Target:  5'- gGGGUgccugcgaCGuCGACGACGCGGUCGaaGAAc -3'
miRNA:   3'- -UCCA--------GCuGCUGCUGCGCUAGCg-CUUc -5'
26388 5' -54.8 NC_005345.2 + 27316 0.69 0.589979
Target:  5'- gGGGUCGAgUGGCugaGAgGCGAUCuGCGGAc -3'
miRNA:   3'- -UCCAGCU-GCUG---CUgCGCUAG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 17772 0.69 0.589979
Target:  5'- cAGGUaccCGGCGAUGACGgCGAcCGCGu-- -3'
miRNA:   3'- -UCCA---GCUGCUGCUGC-GCUaGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 20877 0.7 0.504724
Target:  5'- -uGUCGACGAgCuuCGCGAUCGCGucGu -3'
miRNA:   3'- ucCAGCUGCU-GcuGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 29876 0.7 0.508874
Target:  5'- gAGGUgGGCGAgGACGgucgacaggugcaccCGGUCGCGGu- -3'
miRNA:   3'- -UCCAgCUGCUgCUGC---------------GCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 20804 0.7 0.515127
Target:  5'- cGG-CGcCGACGGCGCGuGUCGCGc-- -3'
miRNA:   3'- uCCaGCuGCUGCUGCGC-UAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 39841 0.7 0.494413
Target:  5'- cGGGUCGcCGACGAacucaaCGcCGGcCGCGAGGu -3'
miRNA:   3'- -UCCAGCuGCUGCU------GC-GCUaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 38407 0.7 0.525615
Target:  5'- cGGcGUCGGCGACGACauCGAgCGCGGc- -3'
miRNA:   3'- -UC-CAGCUGCUGCUGc-GCUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 30245 0.7 0.494413
Target:  5'- cGGUCGACGACGGUGCgGGUC-CGGc- -3'
miRNA:   3'- uCCAGCUGCUGCUGCG-CUAGcGCUuc -5'
26388 5' -54.8 NC_005345.2 + 43273 0.7 0.525615
Target:  5'- cGGUCGuuucggugGCGACGACGUccUCgGCGAGGu -3'
miRNA:   3'- uCCAGC--------UGCUGCUGCGcuAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 44863 0.7 0.536184
Target:  5'- gAGG-CGccccGCGGCGGcCGCG-UCGCGAGGc -3'
miRNA:   3'- -UCCaGC----UGCUGCU-GCGCuAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 5579 0.7 0.504724
Target:  5'- cGGGUCaGuuGGCGAgGCGGUCgGCGAGc -3'
miRNA:   3'- -UCCAG-CugCUGCUgCGCUAG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 39414 0.7 0.515127
Target:  5'- cGGga-GCGuCGGCGCGGUCGCGGc- -3'
miRNA:   3'- uCCagcUGCuGCUGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 28332 0.7 0.484198
Target:  5'- cAGGaCGACGACGAgCGCGAcaCGCGccGu -3'
miRNA:   3'- -UCCaGCUGCUGCU-GCGCUa-GCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 33762 0.7 0.533005
Target:  5'- cAGGUCaacgacucccugcgGACGcucgcgcagaACGGCGUGAUCGCGGu- -3'
miRNA:   3'- -UCCAG--------------CUGC----------UGCUGCGCUAGCGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.