miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 28260 1.08 0.001438
Target:  5'- gAGGUCGACGACGACGCGAUCGCGAAGc -3'
miRNA:   3'- -UCCAGCUGCUGCUGCGCUAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 30223 0.81 0.111125
Target:  5'- -cGUCGACGcCGACGCGAgcCGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGCGCUa-GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 8442 0.81 0.117197
Target:  5'- -uGUCGACGACGagcacggGCGCGGUCGCGAc- -3'
miRNA:   3'- ucCAGCUGCUGC-------UGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 2186 0.78 0.167687
Target:  5'- cGGGUgcaacgcCGAUGGCGcGCGCGAUCGCGGAc -3'
miRNA:   3'- -UCCA-------GCUGCUGC-UGCGCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 41549 0.77 0.208312
Target:  5'- uGGUCGACGACGuCGUGcgCGCGc-- -3'
miRNA:   3'- uCCAGCUGCUGCuGCGCuaGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 43510 0.75 0.276803
Target:  5'- aAGGUCG-CGGCGAacccgGCGcUCGCGGAGc -3'
miRNA:   3'- -UCCAGCuGCUGCUg----CGCuAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 45841 0.75 0.276803
Target:  5'- cGG-CGGCGGCGcggGCGaCGAUCGUGggGg -3'
miRNA:   3'- uCCaGCUGCUGC---UGC-GCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 24106 0.74 0.321206
Target:  5'- gGGGUCGGCGuacaugcccACGACGuCGuacGUCGCGAAc -3'
miRNA:   3'- -UCCAGCUGC---------UGCUGC-GC---UAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 40069 0.73 0.370728
Target:  5'- cGGUCGcCGGCGACGgCGGcccggauaaagUCGCGGAc -3'
miRNA:   3'- uCCAGCuGCUGCUGC-GCU-----------AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 40271 0.73 0.345331
Target:  5'- -cGUCGACGACGGCccggccGUGAUCGUGGGc -3'
miRNA:   3'- ucCAGCUGCUGCUG------CGCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 11888 0.73 0.345331
Target:  5'- --cUCGACGACGACGCGAcCGCc--- -3'
miRNA:   3'- uccAGCUGCUGCUGCGCUaGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 29659 0.73 0.362122
Target:  5'- aAGGUCGccguCGACGGCGUGuccaCGCGGAu -3'
miRNA:   3'- -UCCAGCu---GCUGCUGCGCua--GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 44451 0.72 0.425215
Target:  5'- cGGGUguACuGCGGCGCGAUCGUGAu- -3'
miRNA:   3'- -UCCAgcUGcUGCUGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 15042 0.72 0.388355
Target:  5'- -cGUCGGCGGCGAUGuCGccGUCGCGGGc -3'
miRNA:   3'- ucCAGCUGCUGCUGC-GC--UAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 34758 0.72 0.41487
Target:  5'- cGG-CGGCGGCGgugacgcgcggcuACGCGAUCGUGcAGGg -3'
miRNA:   3'- uCCaGCUGCUGC-------------UGCGCUAGCGC-UUC- -5'
26388 5' -54.8 NC_005345.2 + 33174 0.72 0.397372
Target:  5'- gAGGUacgGACGAccuCGGCGaCGAUCGCGGGc -3'
miRNA:   3'- -UCCAg--CUGCU---GCUGC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 40987 0.72 0.406523
Target:  5'- cGGcGUCGGCGGCGACuuccugguucagGCGAUcagCGCGAAa -3'
miRNA:   3'- -UC-CAGCUGCUGCUG------------CGCUA---GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 9400 0.72 0.397372
Target:  5'- -cGUCGuCGACGGCGCGuggcaGCGggGu -3'
miRNA:   3'- ucCAGCuGCUGCUGCGCuag--CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 14048 0.71 0.464081
Target:  5'- cGGGaCGACGACcgcgaccACGaCGAUCGCGAAc -3'
miRNA:   3'- -UCCaGCUGCUGc------UGC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 37254 0.71 0.464081
Target:  5'- cGGG-CGACGGCGGCggucGCGucGUCGuCGAGGg -3'
miRNA:   3'- -UCCaGCUGCUGCUG----CGC--UAGC-GCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.