Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 30390 | 0.71 | 0.454188 |
Target: 5'- cAGGUCGAggcguaccuCGACGACGCGucCGCGc-- -3' miRNA: 3'- -UCCAGCU---------GCUGCUGCGCuaGCGCuuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 30684 | 0.71 | 0.461101 |
Target: 5'- uGGGUCGACGAuccggcCGGCugcggguggccgcgGUGAUCgGCGAGGa -3' miRNA: 3'- -UCCAGCUGCU------GCUG--------------CGCUAG-CGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 48427 | 0.71 | 0.44441 |
Target: 5'- -cGUCGACGGCGugGgCGAUC-UGGAGc -3' miRNA: 3'- ucCAGCUGCUGCugC-GCUAGcGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 12467 | 0.71 | 0.434751 |
Target: 5'- cGGGgcaGGCGA-GGCGCGAcgaucUCGCGGAGc -3' miRNA: 3'- -UCCag-CUGCUgCUGCGCU-----AGCGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 3342 | 0.71 | 0.454188 |
Target: 5'- cGGUCG-CGACGACGgaCGAccUCGCGcAGu -3' miRNA: 3'- uCCAGCuGCUGCUGC--GCU--AGCGCuUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 14048 | 0.71 | 0.464081 |
Target: 5'- cGGGaCGACGACcgcgaccACGaCGAUCGCGAAc -3' miRNA: 3'- -UCCaGCUGCUGc------UGC-GCUAGCGCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 23752 | 0.71 | 0.464081 |
Target: 5'- cGGccUCGACGGCGAggccggcgGCGAUCGCGucGa -3' miRNA: 3'- uCC--AGCUGCUGCUg-------CGCUAGCGCuuC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 30885 | 0.71 | 0.464081 |
Target: 5'- cGGGUgCgGGCGACGGCGCGGcCgGCGAGc -3' miRNA: 3'- -UCCA-G-CUGCUGCUGCGCUaG-CGCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 39841 | 0.7 | 0.494413 |
Target: 5'- cGGGUCGcCGACGAacucaaCGcCGGcCGCGAGGu -3' miRNA: 3'- -UCCAGCuGCUGCU------GC-GCUaGCGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 2679 | 0.7 | 0.494413 |
Target: 5'- cGGUCGAUG-CGGCGgGG-CGCGGGa -3' miRNA: 3'- uCCAGCUGCuGCUGCgCUaGCGCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 28332 | 0.7 | 0.484198 |
Target: 5'- cAGGaCGACGACGAgCGCGAcaCGCGccGu -3' miRNA: 3'- -UCCaGCUGCUGCU-GCGCUa-GCGCuuC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 5579 | 0.7 | 0.504724 |
Target: 5'- cGGGUCaGuuGGCGAgGCGGUCgGCGAGc -3' miRNA: 3'- -UCCAG-CugCUGCUgCGCUAG-CGCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 20877 | 0.7 | 0.504724 |
Target: 5'- -uGUCGACGAgCuuCGCGAUCGCGucGu -3' miRNA: 3'- ucCAGCUGCU-GcuGCGCUAGCGCuuC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 44863 | 0.7 | 0.536184 |
Target: 5'- gAGG-CGccccGCGGCGGcCGCG-UCGCGAGGc -3' miRNA: 3'- -UCCaGC----UGCUGCU-GCGCuAGCGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 20804 | 0.7 | 0.515127 |
Target: 5'- cGG-CGcCGACGGCGCGuGUCGCGc-- -3' miRNA: 3'- uCCaGCuGCUGCUGCGC-UAGCGCuuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 30245 | 0.7 | 0.494413 |
Target: 5'- cGGUCGACGACGGUGCgGGUC-CGGc- -3' miRNA: 3'- uCCAGCUGCUGCUGCG-CUAGcGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 43273 | 0.7 | 0.525615 |
Target: 5'- cGGUCGuuucggugGCGACGACGUccUCgGCGAGGu -3' miRNA: 3'- uCCAGC--------UGCUGCUGCGcuAG-CGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 38407 | 0.7 | 0.525615 |
Target: 5'- cGGcGUCGGCGACGACauCGAgCGCGGc- -3' miRNA: 3'- -UC-CAGCUGCUGCUGc-GCUaGCGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 39414 | 0.7 | 0.515127 |
Target: 5'- cGGga-GCGuCGGCGCGGUCGCGGc- -3' miRNA: 3'- uCCagcUGCuGCUGCGCUAGCGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 29876 | 0.7 | 0.508874 |
Target: 5'- gAGGUgGGCGAgGACGgucgacaggugcaccCGGUCGCGGu- -3' miRNA: 3'- -UCCAgCUGCUgCUGC---------------GCUAGCGCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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