Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26388 | 5' | -54.8 | NC_005345.2 | + | 14337 | 0.68 | 0.655572 |
Target: 5'- aGGGgcaGGCGcACGGCGUG--CGCGAGGa -3' miRNA: 3'- -UCCag-CUGC-UGCUGCGCuaGCGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 6126 | 0.68 | 0.655572 |
Target: 5'- cGGcCGcCGACGACGCaGUaCGgGAAGa -3' miRNA: 3'- uCCaGCuGCUGCUGCGcUA-GCgCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 12419 | 0.68 | 0.600876 |
Target: 5'- cGGcCGAUGACGucgagGCGCG-UCGCGcGGg -3' miRNA: 3'- uCCaGCUGCUGC-----UGCGCuAGCGCuUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 45134 | 0.68 | 0.611799 |
Target: 5'- cAGGUCGAgGACGuCGUGAauguugcucUCGaCGAGc -3' miRNA: 3'- -UCCAGCUgCUGCuGCGCU---------AGC-GCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 9172 | 0.68 | 0.600876 |
Target: 5'- uAGGacUCGGCGAgCGugGCGAggaaUCGCGc-- -3' miRNA: 3'- -UCC--AGCUGCU-GCugCGCU----AGCGCuuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 14903 | 0.68 | 0.600876 |
Target: 5'- cAGGUCGAgGAC--CGCGuUCGCGGc- -3' miRNA: 3'- -UCCAGCUgCUGcuGCGCuAGCGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 34518 | 0.68 | 0.611799 |
Target: 5'- cGGUCGA-GGCGGgcCGCGGccUCGCGGGc -3' miRNA: 3'- uCCAGCUgCUGCU--GCGCU--AGCGCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 27985 | 0.68 | 0.62274 |
Target: 5'- -cGUCGACgGGCGGgGCG-UCGCGuAGGg -3' miRNA: 3'- ucCAGCUG-CUGCUgCGCuAGCGC-UUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 30445 | 0.68 | 0.62274 |
Target: 5'- ---gCGAUGACGACGCcGAcCGCGAu- -3' miRNA: 3'- uccaGCUGCUGCUGCG-CUaGCGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 18937 | 0.68 | 0.633688 |
Target: 5'- -cGUCGGCGuCGACGuUGAUCucguggcgGCGAGGa -3' miRNA: 3'- ucCAGCUGCuGCUGC-GCUAG--------CGCUUC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 1089 | 0.68 | 0.644636 |
Target: 5'- --cUCGACGGCGACgaGCGGUgCGCGccGg -3' miRNA: 3'- uccAGCUGCUGCUG--CGCUA-GCGCuuC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 17647 | 0.68 | 0.644636 |
Target: 5'- cGGUCGGucACGAcCGUGuUCGCGggGc -3' miRNA: 3'- uCCAGCUgcUGCU-GCGCuAGCGCuuC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 24592 | 0.68 | 0.644636 |
Target: 5'- cAGGcCGGCGACGA-GCGAcugcUCGuCGGAc -3' miRNA: 3'- -UCCaGCUGCUGCUgCGCU----AGC-GCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 25140 | 0.68 | 0.655572 |
Target: 5'- --cUCGGCGA--GCGCGAUCGCGccGa -3' miRNA: 3'- uccAGCUGCUgcUGCGCUAGCGCuuC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 2523 | 0.67 | 0.709719 |
Target: 5'- uGGcaUCGACGugGgggguuuccACGCGGUgGCGAc- -3' miRNA: 3'- uCC--AGCUGCugC---------UGCGCUAgCGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 8175 | 0.67 | 0.688209 |
Target: 5'- -cGcCGACGcCGAgGuCGAUCGCGAAa -3' miRNA: 3'- ucCaGCUGCuGCUgC-GCUAGCGCUUc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 43622 | 0.67 | 0.688209 |
Target: 5'- cAGGUCgGGCccccCGGCGgGGUCGCGGu- -3' miRNA: 3'- -UCCAG-CUGcu--GCUGCgCUAGCGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 31250 | 0.67 | 0.688209 |
Target: 5'- gGGGUCGGguGCGcacucggguGCGCGggUGCGggGg -3' miRNA: 3'- -UCCAGCUgcUGC---------UGCGCuaGCGCuuC- -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 43457 | 0.67 | 0.677369 |
Target: 5'- aGGGaCGGCGGCGAguuCGCGGcgcagCGCGGu- -3' miRNA: 3'- -UCCaGCUGCUGCU---GCGCUa----GCGCUuc -5' |
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26388 | 5' | -54.8 | NC_005345.2 | + | 20134 | 0.67 | 0.666486 |
Target: 5'- -cGUCGACGuCGACGUucggGAgccaccgCGCGAGGc -3' miRNA: 3'- ucCAGCUGCuGCUGCG----CUa------GCGCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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