miRNA display CGI


Results 21 - 40 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 48427 0.71 0.44441
Target:  5'- -cGUCGACGGCGugGgCGAUC-UGGAGc -3'
miRNA:   3'- ucCAGCUGCUGCugC-GCUAGcGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 30390 0.71 0.454188
Target:  5'- cAGGUCGAggcguaccuCGACGACGCGucCGCGc-- -3'
miRNA:   3'- -UCCAGCU---------GCUGCUGCGCuaGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 3342 0.71 0.454188
Target:  5'- cGGUCG-CGACGACGgaCGAccUCGCGcAGu -3'
miRNA:   3'- uCCAGCuGCUGCUGC--GCU--AGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 30684 0.71 0.461101
Target:  5'- uGGGUCGACGAuccggcCGGCugcggguggccgcgGUGAUCgGCGAGGa -3'
miRNA:   3'- -UCCAGCUGCU------GCUG--------------CGCUAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 37254 0.71 0.464081
Target:  5'- cGGG-CGACGGCGGCggucGCGucGUCGuCGAGGg -3'
miRNA:   3'- -UCCaGCUGCUGCUG----CGC--UAGC-GCUUC- -5'
26388 5' -54.8 NC_005345.2 + 14048 0.71 0.464081
Target:  5'- cGGGaCGACGACcgcgaccACGaCGAUCGCGAAc -3'
miRNA:   3'- -UCCaGCUGCUGc------UGC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 30885 0.71 0.464081
Target:  5'- cGGGUgCgGGCGACGGCGCGGcCgGCGAGc -3'
miRNA:   3'- -UCCA-G-CUGCUGCUGCGCUaG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 23752 0.71 0.464081
Target:  5'- cGGccUCGACGGCGAggccggcgGCGAUCGCGucGa -3'
miRNA:   3'- uCC--AGCUGCUGCUg-------CGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 28332 0.7 0.484198
Target:  5'- cAGGaCGACGACGAgCGCGAcaCGCGccGu -3'
miRNA:   3'- -UCCaGCUGCUGCU-GCGCUa-GCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 39841 0.7 0.494413
Target:  5'- cGGGUCGcCGACGAacucaaCGcCGGcCGCGAGGu -3'
miRNA:   3'- -UCCAGCuGCUGCU------GC-GCUaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 2679 0.7 0.494413
Target:  5'- cGGUCGAUG-CGGCGgGG-CGCGGGa -3'
miRNA:   3'- uCCAGCUGCuGCUGCgCUaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 30245 0.7 0.494413
Target:  5'- cGGUCGACGACGGUGCgGGUC-CGGc- -3'
miRNA:   3'- uCCAGCUGCUGCUGCG-CUAGcGCUuc -5'
26388 5' -54.8 NC_005345.2 + 20877 0.7 0.504724
Target:  5'- -uGUCGACGAgCuuCGCGAUCGCGucGu -3'
miRNA:   3'- ucCAGCUGCU-GcuGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 5579 0.7 0.504724
Target:  5'- cGGGUCaGuuGGCGAgGCGGUCgGCGAGc -3'
miRNA:   3'- -UCCAG-CugCUGCUgCGCUAG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 29876 0.7 0.508874
Target:  5'- gAGGUgGGCGAgGACGgucgacaggugcaccCGGUCGCGGu- -3'
miRNA:   3'- -UCCAgCUGCUgCUGC---------------GCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 39414 0.7 0.515127
Target:  5'- cGGga-GCGuCGGCGCGGUCGCGGc- -3'
miRNA:   3'- uCCagcUGCuGCUGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 20804 0.7 0.515127
Target:  5'- cGG-CGcCGACGGCGCGuGUCGCGc-- -3'
miRNA:   3'- uCCaGCuGCUGCUGCGC-UAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 43273 0.7 0.525615
Target:  5'- cGGUCGuuucggugGCGACGACGUccUCgGCGAGGu -3'
miRNA:   3'- uCCAGC--------UGCUGCUGCGcuAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 38407 0.7 0.525615
Target:  5'- cGGcGUCGGCGACGACauCGAgCGCGGc- -3'
miRNA:   3'- -UC-CAGCUGCUGCUGc-GCUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 33762 0.7 0.533005
Target:  5'- cAGGUCaacgacucccugcgGACGcucgcgcagaACGGCGUGAUCGCGGu- -3'
miRNA:   3'- -UCCAG--------------CUGC----------UGCUGCGCUAGCGCUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.