miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 44863 0.7 0.536184
Target:  5'- gAGG-CGccccGCGGCGGcCGCG-UCGCGAGGc -3'
miRNA:   3'- -UCCaGC----UGCUGCU-GCGCuAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 41031 0.69 0.545758
Target:  5'- -cGUCGACGACGGCGgccggguCGGUCuuGCGGAa -3'
miRNA:   3'- ucCAGCUGCUGCUGC-------GCUAG--CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 29998 0.69 0.546825
Target:  5'- cGGGccCGGCGACGACGUcccggccgaGGUCGCcGAGc -3'
miRNA:   3'- -UCCa-GCUGCUGCUGCG---------CUAGCGcUUC- -5'
26388 5' -54.8 NC_005345.2 + 26753 0.69 0.546825
Target:  5'- gAGGaacUCGACGAgucccCGGCGCGggUGCGgcGg -3'
miRNA:   3'- -UCC---AGCUGCU-----GCUGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 24890 0.69 0.5683
Target:  5'- gAGGaUGcCGACGACGUGAUCG-GAGa -3'
miRNA:   3'- -UCCaGCuGCUGCUGCGCUAGCgCUUc -5'
26388 5' -54.8 NC_005345.2 + 3526 0.69 0.5683
Target:  5'- cAGGUucCGGCGACGAUGUcgaucaGGUCGUGcAGg -3'
miRNA:   3'- -UCCA--GCUGCUGCUGCG------CUAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 3721 0.69 0.5683
Target:  5'- gGGGUgccugcgaCGuCGACGACGCGGUCGaaGAAc -3'
miRNA:   3'- -UCCA--------GCuGCUGCUGCGCUAGCg-CUUc -5'
26388 5' -54.8 NC_005345.2 + 23248 0.69 0.5683
Target:  5'- cGGGUCGuacuCGACGAUGCacUCGCucGGg -3'
miRNA:   3'- -UCCAGCu---GCUGCUGCGcuAGCGcuUC- -5'
26388 5' -54.8 NC_005345.2 + 42129 0.69 0.579118
Target:  5'- cGGUCGAcCGGCGacccgGCGuCGAUCGCa--- -3'
miRNA:   3'- uCCAGCU-GCUGC-----UGC-GCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 22859 0.69 0.579118
Target:  5'- gGGuGUCGACGACGA-GCGggCGCc--- -3'
miRNA:   3'- -UC-CAGCUGCUGCUgCGCuaGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 27316 0.69 0.589979
Target:  5'- gGGGUCGAgUGGCugaGAgGCGAUCuGCGGAc -3'
miRNA:   3'- -UCCAGCU-GCUG---CUgCGCUAG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 17772 0.69 0.589979
Target:  5'- cAGGUaccCGGCGAUGACGgCGAcCGCGu-- -3'
miRNA:   3'- -UCCA---GCUGCUGCUGC-GCUaGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 12194 0.69 0.589979
Target:  5'- aGGGacUCGACGACGAgcgaggacucgcCGCGGUCGgcCGGAc -3'
miRNA:   3'- -UCC--AGCUGCUGCU------------GCGCUAGC--GCUUc -5'
26388 5' -54.8 NC_005345.2 + 5425 0.69 0.589979
Target:  5'- cGG-CGGCGACGACGgCGuUCGUaucGAGGu -3'
miRNA:   3'- uCCaGCUGCUGCUGC-GCuAGCG---CUUC- -5'
26388 5' -54.8 NC_005345.2 + 23998 0.68 0.600876
Target:  5'- -aGUCGcCGuucguCGGCGCGAUCGCGc-- -3'
miRNA:   3'- ucCAGCuGCu----GCUGCGCUAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 14903 0.68 0.600876
Target:  5'- cAGGUCGAgGAC--CGCGuUCGCGGc- -3'
miRNA:   3'- -UCCAGCUgCUGcuGCGCuAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 9172 0.68 0.600876
Target:  5'- uAGGacUCGGCGAgCGugGCGAggaaUCGCGc-- -3'
miRNA:   3'- -UCC--AGCUGCU-GCugCGCU----AGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 12419 0.68 0.600876
Target:  5'- cGGcCGAUGACGucgagGCGCG-UCGCGcGGg -3'
miRNA:   3'- uCCaGCUGCUGC-----UGCGCuAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 20623 0.68 0.610706
Target:  5'- --cUCGGCGACGGgGCGAUCgagcgcaGCGGAu -3'
miRNA:   3'- uccAGCUGCUGCUgCGCUAG-------CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 45134 0.68 0.611799
Target:  5'- cAGGUCGAgGACGuCGUGAauguugcucUCGaCGAGc -3'
miRNA:   3'- -UCCAGCUgCUGCuGCGCU---------AGC-GCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.