miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 34518 0.68 0.611799
Target:  5'- cGGUCGA-GGCGGgcCGCGGccUCGCGGGc -3'
miRNA:   3'- uCCAGCUgCUGCU--GCGCU--AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 21333 0.68 0.62274
Target:  5'- uGGGUCGACaGCGAuCGaCGAUC-CGAGc -3'
miRNA:   3'- -UCCAGCUGcUGCU-GC-GCUAGcGCUUc -5'
26388 5' -54.8 NC_005345.2 + 30445 0.68 0.62274
Target:  5'- ---gCGAUGACGACGCcGAcCGCGAu- -3'
miRNA:   3'- uccaGCUGCUGCUGCG-CUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 27985 0.68 0.62274
Target:  5'- -cGUCGACgGGCGGgGCG-UCGCGuAGGg -3'
miRNA:   3'- ucCAGCUG-CUGCUgCGCuAGCGC-UUC- -5'
26388 5' -54.8 NC_005345.2 + 12762 0.68 0.62274
Target:  5'- cGGccgCGGCaGACGugGCGcgCGUGGAc -3'
miRNA:   3'- uCCa--GCUG-CUGCugCGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 18937 0.68 0.633688
Target:  5'- -cGUCGGCGuCGACGuUGAUCucguggcgGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGC-GCUAG--------CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 11577 0.68 0.644636
Target:  5'- cAGcUCGACGACGGgcgccuCGCGGUgGCGuGGg -3'
miRNA:   3'- -UCcAGCUGCUGCU------GCGCUAgCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 1228 0.68 0.644636
Target:  5'- cGGGUCGGCGuACGuC-CGuUCGCGGAc -3'
miRNA:   3'- -UCCAGCUGC-UGCuGcGCuAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 17647 0.68 0.644636
Target:  5'- cGGUCGGucACGAcCGUGuUCGCGggGc -3'
miRNA:   3'- uCCAGCUgcUGCU-GCGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 1089 0.68 0.644636
Target:  5'- --cUCGACGGCGACgaGCGGUgCGCGccGg -3'
miRNA:   3'- uccAGCUGCUGCUG--CGCUA-GCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 24592 0.68 0.644636
Target:  5'- cAGGcCGGCGACGA-GCGAcugcUCGuCGGAc -3'
miRNA:   3'- -UCCaGCUGCUGCUgCGCU----AGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 14337 0.68 0.655572
Target:  5'- aGGGgcaGGCGcACGGCGUG--CGCGAGGa -3'
miRNA:   3'- -UCCag-CUGC-UGCUGCGCuaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 25140 0.68 0.655572
Target:  5'- --cUCGGCGA--GCGCGAUCGCGccGa -3'
miRNA:   3'- uccAGCUGCUgcUGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 6126 0.68 0.655572
Target:  5'- cGGcCGcCGACGACGCaGUaCGgGAAGa -3'
miRNA:   3'- uCCaGCuGCUGCUGCGcUA-GCgCUUC- -5'
26388 5' -54.8 NC_005345.2 + 8284 0.67 0.665396
Target:  5'- cGGUCGAa-GCGgccgcccuccugcACGUGAUCGCGgcGg -3'
miRNA:   3'- uCCAGCUgcUGC-------------UGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 3838 0.67 0.666486
Target:  5'- gAGGUCGGCGGCGuGCGgacccggcUGAUCgGCGucGg -3'
miRNA:   3'- -UCCAGCUGCUGC-UGC--------GCUAG-CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 5617 0.67 0.666486
Target:  5'- cGGGcUCGugGcCGACGCGGugaUCGcCGAc- -3'
miRNA:   3'- -UCC-AGCugCuGCUGCGCU---AGC-GCUuc -5'
26388 5' -54.8 NC_005345.2 + 22135 0.67 0.666486
Target:  5'- -cGUCGACGugGuCGCGcuacCGCGAc- -3'
miRNA:   3'- ucCAGCUGCugCuGCGCua--GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 20134 0.67 0.666486
Target:  5'- -cGUCGACGuCGACGUucggGAgccaccgCGCGAGGc -3'
miRNA:   3'- ucCAGCUGCuGCUGCG----CUa------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 32799 0.67 0.666486
Target:  5'- cGG-CGAUGcuCGGCGCGuucCGCGAGGc -3'
miRNA:   3'- uCCaGCUGCu-GCUGCGCua-GCGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.