miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 15367 0.67 0.688209
Target:  5'- uAGG-CGGCGACGGCag---CGCGggGg -3'
miRNA:   3'- -UCCaGCUGCUGCUGcgcuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 43622 0.67 0.688209
Target:  5'- cAGGUCgGGCccccCGGCGgGGUCGCGGu- -3'
miRNA:   3'- -UCCAG-CUGcu--GCUGCgCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 31250 0.67 0.688209
Target:  5'- gGGGUCGGguGCGcacucggguGCGCGggUGCGggGg -3'
miRNA:   3'- -UCCAGCUgcUGC---------UGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 35231 0.67 0.681711
Target:  5'- -aGUCGGCGcucaagccggcguuCGACGCGAUCGUgcucacccuGAAGg -3'
miRNA:   3'- ucCAGCUGCu-------------GCUGCGCUAGCG---------CUUC- -5'
26388 5' -54.8 NC_005345.2 + 43457 0.67 0.677369
Target:  5'- aGGGaCGGCGGCGAguuCGCGGcgcagCGCGGu- -3'
miRNA:   3'- -UCCaGCUGCUGCU---GCGCUa----GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 7239 0.67 0.677369
Target:  5'- -cGUCGGCGACGACcaggGCGA-CGaCGAGc -3'
miRNA:   3'- ucCAGCUGCUGCUG----CGCUaGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 19065 0.67 0.677369
Target:  5'- uGGUCGccuACGGgGucuACGCGAUCGUGcGGg -3'
miRNA:   3'- uCCAGC---UGCUgC---UGCGCUAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 20134 0.67 0.666486
Target:  5'- -cGUCGACGuCGACGUucggGAgccaccgCGCGAGGc -3'
miRNA:   3'- ucCAGCUGCuGCUGCG----CUa------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 3838 0.67 0.666486
Target:  5'- gAGGUCGGCGGCGuGCGgacccggcUGAUCgGCGucGg -3'
miRNA:   3'- -UCCAGCUGCUGC-UGC--------GCUAG-CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 32799 0.67 0.666486
Target:  5'- cGG-CGAUGcuCGGCGCGuucCGCGAGGc -3'
miRNA:   3'- uCCaGCUGCu-GCUGCGCua-GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 22135 0.67 0.666486
Target:  5'- -cGUCGACGugGuCGCGcuacCGCGAc- -3'
miRNA:   3'- ucCAGCUGCugCuGCGCua--GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 5617 0.67 0.666486
Target:  5'- cGGGcUCGugGcCGACGCGGugaUCGcCGAc- -3'
miRNA:   3'- -UCC-AGCugCuGCUGCGCU---AGC-GCUuc -5'
26388 5' -54.8 NC_005345.2 + 11029 0.67 0.666486
Target:  5'- cGGUCGAUGACGGgGCccacUCGCacccGAAGu -3'
miRNA:   3'- uCCAGCUGCUGCUgCGcu--AGCG----CUUC- -5'
26388 5' -54.8 NC_005345.2 + 38970 0.67 0.666486
Target:  5'- cGGUCGA-GAuCGGCGCGAccaccgUCGCGu-- -3'
miRNA:   3'- uCCAGCUgCU-GCUGCGCU------AGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 8284 0.67 0.665396
Target:  5'- cGGUCGAa-GCGgccgcccuccugcACGUGAUCGCGgcGg -3'
miRNA:   3'- uCCAGCUgcUGC-------------UGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 6126 0.68 0.655572
Target:  5'- cGGcCGcCGACGACGCaGUaCGgGAAGa -3'
miRNA:   3'- uCCaGCuGCUGCUGCGcUA-GCgCUUC- -5'
26388 5' -54.8 NC_005345.2 + 25140 0.68 0.655572
Target:  5'- --cUCGGCGA--GCGCGAUCGCGccGa -3'
miRNA:   3'- uccAGCUGCUgcUGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 14337 0.68 0.655572
Target:  5'- aGGGgcaGGCGcACGGCGUG--CGCGAGGa -3'
miRNA:   3'- -UCCag-CUGC-UGCUGCGCuaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 11577 0.68 0.644636
Target:  5'- cAGcUCGACGACGGgcgccuCGCGGUgGCGuGGg -3'
miRNA:   3'- -UCcAGCUGCUGCU------GCGCUAgCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 17647 0.68 0.644636
Target:  5'- cGGUCGGucACGAcCGUGuUCGCGggGc -3'
miRNA:   3'- uCCAGCUgcUGCU-GCGCuAGCGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.