miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 8413 0.67 0.698996
Target:  5'- cGGUCGACGG-GGCGCGGcuggaCGCcGAGc -3'
miRNA:   3'- uCCAGCUGCUgCUGCGCUa----GCGcUUC- -5'
26388 5' -54.8 NC_005345.2 + 8442 0.81 0.117197
Target:  5'- -uGUCGACGACGagcacggGCGCGGUCGCGAc- -3'
miRNA:   3'- ucCAGCUGCUGC-------UGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 9172 0.68 0.600876
Target:  5'- uAGGacUCGGCGAgCGugGCGAggaaUCGCGc-- -3'
miRNA:   3'- -UCC--AGCUGCU-GCugCGCU----AGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 9400 0.72 0.397372
Target:  5'- -cGUCGuCGACGGCGCGuggcaGCGggGu -3'
miRNA:   3'- ucCAGCuGCUGCUGCGCuag--CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 9980 0.66 0.772078
Target:  5'- gGGGUCcgccuCGACcACGUGAaaGCGAAGa -3'
miRNA:   3'- -UCCAGcu---GCUGcUGCGCUagCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 10042 0.66 0.730927
Target:  5'- cGGGcugcUCGcCGAgGACGCGAUCGgGu-- -3'
miRNA:   3'- -UCC----AGCuGCUgCUGCGCUAGCgCuuc -5'
26388 5' -54.8 NC_005345.2 + 10042 0.66 0.720366
Target:  5'- cGuGUCGAgacggagaacCGACGACGCcGAcgUCGCGgcGa -3'
miRNA:   3'- uC-CAGCU----------GCUGCUGCG-CU--AGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 10136 0.67 0.698996
Target:  5'- gAGGUacaGGCGGCGGC-CGcUCuGCGGAGc -3'
miRNA:   3'- -UCCAg--CUGCUGCUGcGCuAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 10664 0.66 0.761977
Target:  5'- cGGGUCGGCGAgcCGAUcaggguguGCG-UCGCGucGu -3'
miRNA:   3'- -UCCAGCUGCU--GCUG--------CGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 11029 0.67 0.666486
Target:  5'- cGGUCGAUGACGGgGCccacUCGCacccGAAGu -3'
miRNA:   3'- uCCAGCUGCUGCUgCGcu--AGCG----CUUC- -5'
26388 5' -54.8 NC_005345.2 + 11217 0.66 0.74139
Target:  5'- -cGUCGGCGuCGAgGCGucCGCGAAc -3'
miRNA:   3'- ucCAGCUGCuGCUgCGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 11577 0.68 0.644636
Target:  5'- cAGcUCGACGACGGgcgccuCGCGGUgGCGuGGg -3'
miRNA:   3'- -UCcAGCUGCUGCU------GCGCUAgCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 11843 0.66 0.74139
Target:  5'- gAGGUCGACGccACGGCGUGGgcaUCGg---- -3'
miRNA:   3'- -UCCAGCUGC--UGCUGCGCU---AGCgcuuc -5'
26388 5' -54.8 NC_005345.2 + 11888 0.73 0.345331
Target:  5'- --cUCGACGACGACGCGAcCGCc--- -3'
miRNA:   3'- uccAGCUGCUGCUGCGCUaGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 12194 0.69 0.589979
Target:  5'- aGGGacUCGACGACGAgcgaggacucgcCGCGGUCGgcCGGAc -3'
miRNA:   3'- -UCC--AGCUGCUGCU------------GCGCUAGC--GCUUc -5'
26388 5' -54.8 NC_005345.2 + 12419 0.68 0.600876
Target:  5'- cGGcCGAUGACGucgagGCGCG-UCGCGcGGg -3'
miRNA:   3'- uCCaGCUGCUGC-----UGCGCuAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 12467 0.71 0.434751
Target:  5'- cGGGgcaGGCGA-GGCGCGAcgaucUCGCGGAGc -3'
miRNA:   3'- -UCCag-CUGCUgCUGCGCU-----AGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 12762 0.68 0.62274
Target:  5'- cGGccgCGGCaGACGugGCGcgCGUGGAc -3'
miRNA:   3'- uCCa--GCUG-CUGCugCGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 14048 0.71 0.464081
Target:  5'- cGGGaCGACGACcgcgaccACGaCGAUCGCGAAc -3'
miRNA:   3'- -UCCaGCUGCUGc------UGC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 14337 0.68 0.655572
Target:  5'- aGGGgcaGGCGcACGGCGUG--CGCGAGGa -3'
miRNA:   3'- -UCCag-CUGC-UGCUGCGCuaGCGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.