miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 14903 0.68 0.600876
Target:  5'- cAGGUCGAgGAC--CGCGuUCGCGGc- -3'
miRNA:   3'- -UCCAGCUgCUGcuGCGCuAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 15042 0.72 0.388355
Target:  5'- -cGUCGGCGGCGAUGuCGccGUCGCGGGc -3'
miRNA:   3'- ucCAGCUGCUGCUGC-GC--UAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 15367 0.67 0.688209
Target:  5'- uAGG-CGGCGACGGCag---CGCGggGg -3'
miRNA:   3'- -UCCaGCUGCUGCUGcgcuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 15977 0.66 0.74139
Target:  5'- -aGUUGGCGAUGuGCGCGGcgucgagguucaUCGCGAGc -3'
miRNA:   3'- ucCAGCUGCUGC-UGCGCU------------AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 15982 0.66 0.768054
Target:  5'- gAGGUCguccguaccucuGugGGCGACGUGcugcccgaggccCGCGAGGg -3'
miRNA:   3'- -UCCAG------------CugCUGCUGCGCua----------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 16348 0.66 0.761977
Target:  5'- -cGUCGGCGGCaucgcggccGGCGCcgcgguGAUCGCGAc- -3'
miRNA:   3'- ucCAGCUGCUG---------CUGCG------CUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 17647 0.68 0.644636
Target:  5'- cGGUCGGucACGAcCGUGuUCGCGggGc -3'
miRNA:   3'- uCCAGCUgcUGCU-GCGCuAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 17772 0.69 0.589979
Target:  5'- cAGGUaccCGGCGAUGACGgCGAcCGCGu-- -3'
miRNA:   3'- -UCCA---GCUGCUGCUGC-GCUaGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 18502 0.66 0.772078
Target:  5'- cGGGUCGAgGuCGA-GCGAguaCGCGGc- -3'
miRNA:   3'- -UCCAGCUgCuGCUgCGCUa--GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 18937 0.68 0.633688
Target:  5'- -cGUCGGCGuCGACGuUGAUCucguggcgGCGAGGa -3'
miRNA:   3'- ucCAGCUGCuGCUGC-GCUAG--------CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 19065 0.67 0.677369
Target:  5'- uGGUCGccuACGGgGucuACGCGAUCGUGcGGg -3'
miRNA:   3'- uCCAGC---UGCUgC---UGCGCUAGCGCuUC- -5'
26388 5' -54.8 NC_005345.2 + 19418 0.67 0.709719
Target:  5'- cGGUCGGCuGCGccGCGuCGGUCGCa--- -3'
miRNA:   3'- uCCAGCUGcUGC--UGC-GCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 20134 0.67 0.666486
Target:  5'- -cGUCGACGuCGACGUucggGAgccaccgCGCGAGGc -3'
miRNA:   3'- ucCAGCUGCuGCUGCG----CUa------GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 20623 0.68 0.610706
Target:  5'- --cUCGGCGACGGgGCGAUCgagcgcaGCGGAu -3'
miRNA:   3'- uccAGCUGCUGCUgCGCUAG-------CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 20804 0.7 0.515127
Target:  5'- cGG-CGcCGACGGCGCGuGUCGCGc-- -3'
miRNA:   3'- uCCaGCuGCUGCUGCGC-UAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 20877 0.7 0.504724
Target:  5'- -uGUCGACGAgCuuCGCGAUCGCGucGu -3'
miRNA:   3'- ucCAGCUGCU-GcuGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 21333 0.68 0.62274
Target:  5'- uGGGUCGACaGCGAuCGaCGAUC-CGAGc -3'
miRNA:   3'- -UCCAGCUGcUGCU-GC-GCUAGcGCUUc -5'
26388 5' -54.8 NC_005345.2 + 22102 0.67 0.698996
Target:  5'- cGGUCGGCGGCucgGugGCGAgcaGCa--- -3'
miRNA:   3'- uCCAGCUGCUG---CugCGCUag-CGcuuc -5'
26388 5' -54.8 NC_005345.2 + 22135 0.67 0.666486
Target:  5'- -cGUCGACGugGuCGCGcuacCGCGAc- -3'
miRNA:   3'- ucCAGCUGCugCuGCGCua--GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 22247 0.66 0.717181
Target:  5'- -cGUCGACGGCGaggugcugccguggGCGCagcgGAUCGuCGAGGc -3'
miRNA:   3'- ucCAGCUGCUGC--------------UGCG----CUAGC-GCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.