miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 22859 0.69 0.579118
Target:  5'- gGGuGUCGACGACGA-GCGggCGCc--- -3'
miRNA:   3'- -UC-CAGCUGCUGCUgCGCuaGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 23248 0.69 0.5683
Target:  5'- cGGGUCGuacuCGACGAUGCacUCGCucGGg -3'
miRNA:   3'- -UCCAGCu---GCUGCUGCGcuAGCGcuUC- -5'
26388 5' -54.8 NC_005345.2 + 23593 0.66 0.772078
Target:  5'- cGGGUCG-CGGCGuucgGCGCGA-CGcCGgcGg -3'
miRNA:   3'- -UCCAGCuGCUGC----UGCGCUaGC-GCuuC- -5'
26388 5' -54.8 NC_005345.2 + 23752 0.71 0.464081
Target:  5'- cGGccUCGACGGCGAggccggcgGCGAUCGCGucGa -3'
miRNA:   3'- uCC--AGCUGCUGCUg-------CGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 23998 0.68 0.600876
Target:  5'- -aGUCGcCGuucguCGGCGCGAUCGCGc-- -3'
miRNA:   3'- ucCAGCuGCu----GCUGCGCUAGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 24106 0.74 0.321206
Target:  5'- gGGGUCGGCGuacaugcccACGACGuCGuacGUCGCGAAc -3'
miRNA:   3'- -UCCAGCUGC---------UGCUGC-GC---UAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 24592 0.68 0.644636
Target:  5'- cAGGcCGGCGACGA-GCGAcugcUCGuCGGAc -3'
miRNA:   3'- -UCCaGCUGCUGCUgCGCU----AGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 24890 0.69 0.5683
Target:  5'- gAGGaUGcCGACGACGUGAUCG-GAGa -3'
miRNA:   3'- -UCCaGCuGCUGCUGCGCUAGCgCUUc -5'
26388 5' -54.8 NC_005345.2 + 25140 0.68 0.655572
Target:  5'- --cUCGGCGA--GCGCGAUCGCGccGa -3'
miRNA:   3'- uccAGCUGCUgcUGCGCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 26753 0.69 0.546825
Target:  5'- gAGGaacUCGACGAgucccCGGCGCGggUGCGgcGg -3'
miRNA:   3'- -UCC---AGCUGCU-----GCUGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 27316 0.69 0.589979
Target:  5'- gGGGUCGAgUGGCugaGAgGCGAUCuGCGGAc -3'
miRNA:   3'- -UCCAGCU-GCUG---CUgCGCUAG-CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 27330 0.67 0.709719
Target:  5'- -aGUCGAUGucGCGugGCGGggCGCGGu- -3'
miRNA:   3'- ucCAGCUGC--UGCugCGCUa-GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 27950 0.67 0.713988
Target:  5'- cGG-CGACGACGACaagcccgaccacaagGcCGAggcCGCGAAGu -3'
miRNA:   3'- uCCaGCUGCUGCUG---------------C-GCUa--GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 27985 0.68 0.62274
Target:  5'- -cGUCGACgGGCGGgGCG-UCGCGuAGGg -3'
miRNA:   3'- ucCAGCUG-CUGCUgCGCuAGCGC-UUC- -5'
26388 5' -54.8 NC_005345.2 + 28088 0.66 0.74139
Target:  5'- -cGUCGAgaagaagauCGACGAgGCGGUCGCc--- -3'
miRNA:   3'- ucCAGCU---------GCUGCUgCGCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 28123 0.66 0.720366
Target:  5'- gGGGuccucUCGGCGGCGAgGgGGUaUGCGAAa -3'
miRNA:   3'- -UCC-----AGCUGCUGCUgCgCUA-GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 28260 1.08 0.001438
Target:  5'- gAGGUCGACGACGACGCGAUCGCGAAGc -3'
miRNA:   3'- -UCCAGCUGCUGCUGCGCUAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 28332 0.7 0.484198
Target:  5'- cAGGaCGACGACGAgCGCGAcaCGCGccGu -3'
miRNA:   3'- -UCCaGCUGCUGCU-GCGCUa-GCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 28429 0.66 0.74139
Target:  5'- cGGUCGcCGAgGGcCGCGAgauguacCGCGAGc -3'
miRNA:   3'- uCCAGCuGCUgCU-GCGCUa------GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 29408 0.66 0.761977
Target:  5'- cGGUgcacgCGACaGCGACGCcGAUCaGCGAu- -3'
miRNA:   3'- uCCA-----GCUGcUGCUGCG-CUAG-CGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.