miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 48427 0.71 0.44441
Target:  5'- -cGUCGACGGCGugGgCGAUC-UGGAGc -3'
miRNA:   3'- ucCAGCUGCUGCugC-GCUAGcGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 48371 0.66 0.751744
Target:  5'- uGGGgcgaGGCGACGGCGCug-CGCugGGAGa -3'
miRNA:   3'- -UCCag--CUGCUGCUGCGcuaGCG--CUUC- -5'
26388 5' -54.8 NC_005345.2 + 45841 0.75 0.276803
Target:  5'- cGG-CGGCGGCGcggGCGaCGAUCGUGggGg -3'
miRNA:   3'- uCCaGCUGCUGC---UGC-GCUAGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 45134 0.68 0.611799
Target:  5'- cAGGUCGAgGACGuCGUGAauguugcucUCGaCGAGc -3'
miRNA:   3'- -UCCAGCUgCUGCuGCGCU---------AGC-GCUUc -5'
26388 5' -54.8 NC_005345.2 + 44863 0.7 0.536184
Target:  5'- gAGG-CGccccGCGGCGGcCGCG-UCGCGAGGc -3'
miRNA:   3'- -UCCaGC----UGCUGCU-GCGCuAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 44451 0.72 0.425215
Target:  5'- cGGGUguACuGCGGCGCGAUCGUGAu- -3'
miRNA:   3'- -UCCAgcUGcUGCUGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 43622 0.67 0.688209
Target:  5'- cAGGUCgGGCccccCGGCGgGGUCGCGGu- -3'
miRNA:   3'- -UCCAG-CUGcu--GCUGCgCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 43510 0.75 0.276803
Target:  5'- aAGGUCG-CGGCGAacccgGCGcUCGCGGAGc -3'
miRNA:   3'- -UCCAGCuGCUGCUg----CGCuAGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 43457 0.67 0.677369
Target:  5'- aGGGaCGGCGGCGAguuCGCGGcgcagCGCGGu- -3'
miRNA:   3'- -UCCaGCUGCUGCU---GCGCUa----GCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 43273 0.7 0.525615
Target:  5'- cGGUCGuuucggugGCGACGACGUccUCgGCGAGGu -3'
miRNA:   3'- uCCAGC--------UGCUGCUGCGcuAG-CGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 42129 0.69 0.579118
Target:  5'- cGGUCGAcCGGCGacccgGCGuCGAUCGCa--- -3'
miRNA:   3'- uCCAGCU-GCUGC-----UGC-GCUAGCGcuuc -5'
26388 5' -54.8 NC_005345.2 + 41549 0.77 0.208312
Target:  5'- uGGUCGACGACGuCGUGcgCGCGc-- -3'
miRNA:   3'- uCCAGCUGCUGCuGCGCuaGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 41031 0.69 0.545758
Target:  5'- -cGUCGACGACGGCGgccggguCGGUCuuGCGGAa -3'
miRNA:   3'- ucCAGCUGCUGCUGC-------GCUAG--CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 40987 0.72 0.406523
Target:  5'- cGGcGUCGGCGGCGACuuccugguucagGCGAUcagCGCGAAa -3'
miRNA:   3'- -UC-CAGCUGCUGCUG------------CGCUA---GCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 40778 0.66 0.730927
Target:  5'- cGGUCGGC--CGGCGCGggCGUGucGc -3'
miRNA:   3'- uCCAGCUGcuGCUGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 40271 0.73 0.345331
Target:  5'- -cGUCGACGACGGCccggccGUGAUCGUGGGc -3'
miRNA:   3'- ucCAGCUGCUGCUG------CGCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 40069 0.73 0.370728
Target:  5'- cGGUCGcCGGCGACGgCGGcccggauaaagUCGCGGAc -3'
miRNA:   3'- uCCAGCuGCUGCUGC-GCU-----------AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 39841 0.7 0.494413
Target:  5'- cGGGUCGcCGACGAacucaaCGcCGGcCGCGAGGu -3'
miRNA:   3'- -UCCAGCuGCUGCU------GC-GCUaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 39763 0.66 0.74139
Target:  5'- -cGUCGACGACGGCgaggaggagugGCGggUGUGGAc -3'
miRNA:   3'- ucCAGCUGCUGCUG-----------CGCuaGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 39414 0.7 0.515127
Target:  5'- cGGga-GCGuCGGCGCGGUCGCGGc- -3'
miRNA:   3'- uCCagcUGCuGCUGCGCUAGCGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.