miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26388 5' -54.8 NC_005345.2 + 38970 0.67 0.666486
Target:  5'- cGGUCGA-GAuCGGCGCGAccaccgUCGCGu-- -3'
miRNA:   3'- uCCAGCUgCU-GCUGCGCU------AGCGCuuc -5'
26388 5' -54.8 NC_005345.2 + 38573 0.67 0.688209
Target:  5'- cGGcaCGGCGuACGugGCGcUCGCGGc- -3'
miRNA:   3'- uCCa-GCUGC-UGCugCGCuAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 38407 0.7 0.525615
Target:  5'- cGGcGUCGGCGACGACauCGAgCGCGGc- -3'
miRNA:   3'- -UC-CAGCUGCUGCUGc-GCUaGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 37254 0.71 0.464081
Target:  5'- cGGG-CGACGGCGGCggucGCGucGUCGuCGAGGg -3'
miRNA:   3'- -UCCaGCUGCUGCUG----CGC--UAGC-GCUUC- -5'
26388 5' -54.8 NC_005345.2 + 37243 0.67 0.709719
Target:  5'- cGGGaacUCGAUGGCuGACGCGAUguacgacaGCGGAa -3'
miRNA:   3'- -UCC---AGCUGCUG-CUGCGCUAg-------CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 37056 0.66 0.730927
Target:  5'- cGGcCGGCGGCGACGUcgucGAUCugucgcugucgGCGAGc -3'
miRNA:   3'- uCCaGCUGCUGCUGCG----CUAG-----------CGCUUc -5'
26388 5' -54.8 NC_005345.2 + 35940 0.71 0.434751
Target:  5'- aAGGUCGGCGGCGuCGUcAUgaGCGggGu -3'
miRNA:   3'- -UCCAGCUGCUGCuGCGcUAg-CGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 35565 0.66 0.761977
Target:  5'- cGGGcUCGccCGG-GACGCGAUCuCGAAGg -3'
miRNA:   3'- -UCC-AGCu-GCUgCUGCGCUAGcGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 35486 0.66 0.74139
Target:  5'- cGGcGUCGAgGGCGGCGCGcugcUCGuCGGc- -3'
miRNA:   3'- -UC-CAGCUgCUGCUGCGCu---AGC-GCUuc -5'
26388 5' -54.8 NC_005345.2 + 35231 0.67 0.681711
Target:  5'- -aGUCGGCGcucaagccggcguuCGACGCGAUCGUgcucacccuGAAGg -3'
miRNA:   3'- ucCAGCUGCu-------------GCUGCGCUAGCG---------CUUC- -5'
26388 5' -54.8 NC_005345.2 + 35083 0.66 0.751744
Target:  5'- aAGGUCuuguucGCGAuCGuCGUGGUCGCGGu- -3'
miRNA:   3'- -UCCAGc-----UGCU-GCuGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 34758 0.72 0.41487
Target:  5'- cGG-CGGCGGCGgugacgcgcggcuACGCGAUCGUGcAGGg -3'
miRNA:   3'- uCCaGCUGCUGC-------------UGCGCUAGCGC-UUC- -5'
26388 5' -54.8 NC_005345.2 + 34518 0.68 0.611799
Target:  5'- cGGUCGA-GGCGGgcCGCGGccUCGCGGGc -3'
miRNA:   3'- uCCAGCUgCUGCU--GCGCU--AGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 33762 0.7 0.533005
Target:  5'- cAGGUCaacgacucccugcgGACGcucgcgcagaACGGCGUGAUCGCGGu- -3'
miRNA:   3'- -UCCAG--------------CUGC----------UGCUGCGCUAGCGCUuc -5'
26388 5' -54.8 NC_005345.2 + 33174 0.72 0.397372
Target:  5'- gAGGUacgGACGAccuCGGCGaCGAUCGCGGGc -3'
miRNA:   3'- -UCCAg--CUGCU---GCUGC-GCUAGCGCUUc -5'
26388 5' -54.8 NC_005345.2 + 33014 0.66 0.720366
Target:  5'- gGGcGUCGACGAUcgGGCuCGGcCGCGggGu -3'
miRNA:   3'- -UC-CAGCUGCUG--CUGcGCUaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 32799 0.67 0.666486
Target:  5'- cGG-CGAUGcuCGGCGCGuucCGCGAGGc -3'
miRNA:   3'- uCCaGCUGCu-GCUGCGCua-GCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 32098 0.66 0.720366
Target:  5'- cGGGuUCGACcucgggcucgGGCaGCGCGggUGCGAGGg -3'
miRNA:   3'- -UCC-AGCUG----------CUGcUGCGCuaGCGCUUC- -5'
26388 5' -54.8 NC_005345.2 + 31250 0.67 0.688209
Target:  5'- gGGGUCGGguGCGcacucggguGCGCGggUGCGggGg -3'
miRNA:   3'- -UCCAGCUgcUGC---------UGCGCuaGCGCuuC- -5'
26388 5' -54.8 NC_005345.2 + 30885 0.71 0.464081
Target:  5'- cGGGUgCgGGCGACGGCGCGGcCgGCGAGc -3'
miRNA:   3'- -UCCA-G-CUGCUGCUGCGCUaG-CGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.